omero-download-tool #535
Open
omero-download-tool #535
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
hamshkhawar
force-pushed
the
omero-ncats
branch
from
201400b to
704d345
Compare
bengtl
reviewed
Aug 15, 2024
utils/omero-download-tool/README.md
Outdated
| | --------------- | ------------------------------------------------------------ | ------ | ----------- | | ||
| | `--dataType` | Object types to be retreived from Omero Server | Input | String | | ||
| | `--name ` | Name of an object | Input | String | | ||
| | `--id ` | Identification of an object of an object | Input | Integer | |
Member
There was a problem hiding this comment.
Suggested change
| | `--id ` | Identification of an object of an object | Input | Integer | | |
| | `--objectId ` | Identification of an object of an object | Input | Integer | |
bengtl
reviewed
Aug 15, 2024
utils/omero-download-tool/README.md
Outdated
|
|
||
| ## Sample docker command: | ||
| ```bash | ||
| docker run -e OMERO_USERNAME=$OMERO_USERNAME -e OMERO_PASSWORD=$OMERO_PASSWORD -v /home/ec2-user/data/:/home/ec2-user/data/ polusai/omero-download-tool:0.1.0-dev0 --dataType="plate" --id=108 --outDir=/home/ec2-user/data/output``` |
Member
There was a problem hiding this comment.
Suggested change
| docker run -e OMERO_USERNAME=$OMERO_USERNAME -e OMERO_PASSWORD=$OMERO_PASSWORD -v /home/ec2-user/data/:/home/ec2-user/data/ polusai/omero-download-tool:0.1.0-dev0 --dataType="plate" --id=108 --outDir=/home/ec2-user/data/output``` | |
| docker run -e OMERO_USERNAME=$OMERO_USERNAME -e OMERO_PASSWORD=$OMERO_PASSWORD -v /home/ec2-user/data/:/home/ec2-user/data/ polusai/omero-download-tool:0.1.0-dev0 --dataType="plate" --objectId=108 --outDir=/home/ec2-user/data/output``` |
Member
Author
There was a problem hiding this comment.
@bengtl I have removed example folder and modify preview function
bengtl
suggested changes
Aug 15, 2024
Member
bengtl
left a comment
bengtl
left a comment
There was a problem hiding this comment.
Mismatch in parameter 'objectId' <-> 'id'
Member
Author
fixed |
bengtl
approved these changes
Aug 16, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR allows to retrieve datasets from omero ncats server