v1.0.0

What's Changed

• Feature/add reads by stage by @kathrynmurie in #51
• update for version v1.0.0 of format; updated unit tests; by @nickjhathaway in #52
• Feature/auto test schema updates by @kathrynmurie in #53
• Hotfix/update spec info by @kathrynmurie in #54
• Hotfix/update panel info builder by @kathrynmurie in #55
• Feature/merge multiple panels by @kathrynmurie in #56
• Hotfix/fix combine multiple pmos by @nickjhathaway in #57
• Add function to count targets per panel by @kathrynmurie in #61
• clarify overwrite warning message; by @nickjhathaway in #65
• added function to add travel info; by @nickjhathaway in #58
• added several exporter functions to go from PMO to various tables; by @nickjhathaway in #64
• Develop by @kathrynmurie in #66
• Update version of pmotools to v1.0.0 by @kathrynmurie in #67
• Develop by @kathrynmurie in #68

Full Changelog: v0.1.0...v1.0.0

test-v1.0.0

What's Changed

• Feature/add reads by stage by @kathrynmurie in #51
• update for version v1.0.0 of format; updated unit tests; by @nickjhathaway in #52
• Feature/auto test schema updates by @kathrynmurie in #53
• Hotfix/update spec info by @kathrynmurie in #54
• Hotfix/update panel info builder by @kathrynmurie in #55
• Feature/merge multiple panels by @kathrynmurie in #56
• Hotfix/fix combine multiple pmos by @nickjhathaway in #57
• Add function to count targets per panel by @kathrynmurie in #61
• clarify overwrite warning message; by @nickjhathaway in #65
• added function to add travel info; by @nickjhathaway in #58
• added several exporter functions to go from PMO to various tables; by @nickjhathaway in #64
• Develop by @kathrynmurie in #66
• Update version of pmotools to v1.0.0 by @kathrynmurie in #67
• Develop by @kathrynmurie in #68

Full Changelog: v0.1.0...test-v1.0.0

v0.1.0

What's Changed

• Add description to readme by @kathryn1995 in #1
• Add dada2 clusters example by @kathryn1995 in #2
• Revert "Add dada2 clusters example" by @kathryn1995 in #3
• Add directory and script to start from by @kathryn1995 in #4
• Add dada2 clusters example by @kathryn1995 in #5
• Haplotype table to json by @kathryn1995 in #6
• Pmo generation workflow by @kathryn1995 in #8
• Add columns to metadata functions by @kathryn1995 in #9
• revert to leaving outputs as dictionary instead of json dump by @kathryn1995 in #10
• Set up structure for unit test by @kathryn1995 in #15
• Add workflow for running unit tests by @kathryn1995 in #16
• Feature/updating pmo engine pmo checker by @nickjhathaway in #17
• Hotfix/update pmo writer pmo reader by @nickjhathaway in #18
• Hotfix/update metadata builder by @kathryn1995 in #21
• validation PMO script by @nickjhathaway in #19
• update pmo engine info extractor by @nickjhathaway in #20
• Hotfix/update panel and target info by @kathryn1995 in #22
• Hotfix/update mhap table to pmo by @kathryn1995 in #25
• early July update to format by @nickjhathaway in #23
• Hotfix/conda instructions by @kathryn1995 in #26
• Allow check to work if same col used for multiple pmo params in panel… by @kathryn1995 in #28
• update to format field names mostly experiment to library by @nickjhathaway in #27
• added temp directories that tear down after testing; by @nickjhathaway in #31
• Feature/pmo builder merge function by @kathryn1995 in #30
• remove old builder functions by @kathryn1995 in #34
• Update detected mhaps to list by @kathryn1995 in #32
• update to pmo scripts for current format by @nickjhathaway in #35
• Update _to_json functions to _to_pmo by @kathryn1995 in #36
• updates to PMO functions that creates new pmos from other pmos so tha… by @nickjhathaway in #38
• Feature/add uv project by @kathryn1995 in #37
• Add pre-commit and update files to comply by @kathryn1995 in #39
• move scripts structure by @nickjhathaway in #41
• Add action to publish package by @kathryn1995 in #40
• updated output to be library_sample_name instead of specimen_name by @nickjhathaway in #42
• Add option to have multiple bioinf ids in build by @kathryn1995 in #43
• Develop by @kathryn1995 in #44
• Hotfix/update testpypi release by @kathryn1995 in #45
• Develop by @kathryn1995 in #46
• skip pushing if already existing by @kathryn1995 in #47
• Develop by @kathryn1995 in #48
• remove skip-existing by @kathryn1995 in #49
• Develop by @kathryn1995 in #50

New Contributors

• @kathryn1995 made their first contribution in #1
• @nickjhathaway made their first contribution in #17

Full Changelog: https://github.com/PlasmoGenEpi/pmotools-python/commits/v0.1.0