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fix _pre_process_single in AmpliconPipeline #297

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fix _pre_process_single in AmpliconPipeline #297

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@ptajvar ptajvar commented Jan 9, 2026

Currently, in single-end amplicon runs, only the last pre-proccessing modifier is applied instead of them being sequentially applied.

  • Bug fix (non-breaking change which fixes an issue)

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PR checklist:

  • This comment contains a description of changes (with reason).
  • I have performed a self-review of my own code
  • I have made corresponding changes to the documentation
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  • If a new tool or package is included, I have updated dependencies in pyproject.toml and cited it properly
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