Skip to content

doc: Mention requirement of Julia 1.7 #41

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
PierreBarrat merged 4 commits into from
Feb 18, 2025
Merged

doc: Mention requirement of Julia 1.7 #41

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
79f2c0b
doc: Mention requirement of Julia 1.7
corneliusroemer Feb 6, 2025
044e02d
Link to oldreleases and use text fragment anchor to scroll to 1.7.3
corneliusroemer Feb 6, 2025
22bb307
fix
corneliusroemer Feb 6, 2025
856d3c7
fix comonicon in julia 1.11
PierreBarrat Feb 7, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 3 additions & 1 deletion docs/src/index.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,9 @@
*TreeKnit* is a julia package that performs inference of reassortment events in segmented genomes, such as human influenza. Additionally, it can reconstruct Ancestral Reassortment Graphs for segment pairs.
## Installation

You can simply install *TreeKnit* using the julia package manager (if you don't have julia, you can get it from [here](https://julialang.org/downloads/)):
*TreeKnit* requires Julia version 1.7, it may not work with higher or lower versions. You can get v1.7.3 of Julia [here](https://julialang.org/downloads/oldreleases/#:~:text=v1.7.3). Alternatively, you can install julia 1.7.3 into a conda environment.

You can install *TreeKnit* using the julia package manager:
```julia
using Pkg
Pkg.add("TreeKnit")
Expand Down
2 changes: 1 addition & 1 deletion src/cli.jl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ We suggest two sets of defaults for running TreeKnit. `--better-trees` will prod
- `-v, --verbose`: set verbosity to 1
- `--auspice-view`: return ouput files for auspice
"""
@main function treeknit(
Comonicon.@main function treeknit(
nwk_file1::AbstractString, nwk_file2::AbstractString, nwk_files::AbstractString...;
# options
outdir::AbstractString = "treeknit_results",
Expand Down