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Make the MultiQC report depend on the cutdapts report, not the trimmed reads

Status: Open.

#106 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 29, 2025

Group cutadapt and FastQC results in the MultiQC report

Status: Open.

#105 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 26, 2025

Have a fast mechanism for retrieving batch information from FASTQ files

Status: Open.

#104 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 23, 2025

CI fails because /rest/v2/datasets/GSE110256/hasbatch requires admin role

Status: Open.

#96 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 28, 2024

Include the webviewer tests on the CI

Status: Open.

#86 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Oct 17, 2023

Report errors on the Slack channel

Status: Open.

#85 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Sep 25, 2023

Use of uninitialized value $doesOpen in numeric eq (==) at contrib/RSEM/rsem-calculate-expression line 574

bug

Status: Open.

#84 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Aug 28, 2023

Killed external tasks leave an empty error message

Status: Open.

#67 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Nov 10, 2021

Use luigi.TaskParameter for platforms and sources-specific tasks

enhancement

Status: Open.

#62 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Aug 16, 2021

Build and install the shared memory cleanup tool during initial setup

Status: Open.

#58 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Jun 25, 2021

Batch information for split experiments

Status: Open.

#56 In PavlidisLab/rnaseq-pipeline;

· sanjarogic opened on Mar 8, 2021

Adjust FastQC limits to be suitable for RNA-Seq

Status: Open.

#54 In PavlidisLab/rnaseq-pipeline;

· arteymix opened on Feb 1, 2021