Ordering of Files on //wilsrv3.iric.ca

Webpage data viewer/
│──bin
|─ drug_response_viewer
 ├── Bin                       #contains all my previous iterations and csv files i used
├   |---response_viewer/
│     ├── main.py                 # Main logic, Streamlit layout, HTML, CSS code
│     ├── utilis.py               # Utility functions
│     ├── connection.py           # MySQL connections
│     ├── authenticator.py        # Adds authentication to the website
│
|-dash
|   ├──bin
└── |--gene_viewer/
|      |--gene_exp_viewer_dbms.py
|      |--authenticator.py
|      |--Requirements.txt
|
|-WebApp_IRIC
|  ├──bin
|__|--GoTo/
|      |--App_all.py
|      |--Cracking-Code-AML.JPG                    #any image file you want to put in the right column(box)
|
     # Other applications

---

Ordering of Files on Cluster

pavan_viewer/                    #directory in cluster where all my files are located
│
├── response_viewer/
│   ├── main.py                 # Main logic, Streamlit layout, HTML, CSS code
│   ├── utilis.py               # Utility functions
│   ├── connection.py           # MySQL connections
│   ├── authenticator.py        # Adds authentication to the website
│
└── gene_viewer/
|    |--gene_exp_viewer_dbms.py
|    |--authenticator.py
|    |--Requirements.txt
|
|
|__ GoTo/
|    |--App_all.py
|    |--Cracking-Code-AML.JPG
|
        # Other applications

Setting Up the Environment

The project uses Miniconda to manage the virtual environment. Below are the steps to set up and activate the environment.

1. Navigate to the Project Directory:

   cd pavan_viewer/response_viewer                                             // on cluster
   Lab Science\Data_Wilhelm Lab\Lab projects\web page data viewer\Webapp_IRIC  // on wilsrv3

2. Activate the Virtual Environment

Navigate to the directory where script files are located and run the following commands in the command line(if you are connected to cluster via SSH) or in VS code(if your running on your local computer):

• Note : The project uses Miniconda for managing the virtual environment. I assume you know how to set up a conda virtual environment(miniconda or anaconda) if not please refer to the installation process of anaconda/miniconda.

conda activate pavan_viewer  

3. Run the Application:

   python main.py            //compile and run python script
   streamlit run main.py    // opens up a new tab in your deafult where you can see the application

File Description of Drug Response Viewer :

main.py

This file contains the main logic for the application, including the Streamlit layout, HTML, and CSS code.

utilis.py

plots()--> Responsible for plots

• This file contains all the utility functions used in the application.

connection.py

This file contains the MySQL connections to the database. If there are any issues with the SQL connection, start troubleshooting here.

authenticator.py

This file adds authentication to the website. The default username and password are:

• Username: admin
• Password: admin You can always change it by simply changing username and password in the authenticator.py file in that directory.

File Description of Genie

gene_exp_viewer_dbms.py

This file contains all the functions, layout, and main logic in the same file

authenticator.py

This file adds the authentication to the script

File Description of SortingHat

App_all.py

This file contains the main logic and HTML

Troubleshooting

If you encounter any issues, especially with the MySQL connection, please check the connection.py file first. Ensure that your database credentials are correct and that the database server is running.

Dependencies

Ensure that you have all the necessary dependencies installed. You can usually install them using:

pip install -r requirements.txt

If requirements.txt is not provided, manually install the required packages as per the imports in the scripts.

Contributing

Contributions are welcome! Please create a pull request with a detailed description of the changes.

License

This project is licensed under the MIT License. See the LICENSE file for details.

---

By following the steps in this README file, you should be able to set up and run the Response Viewer (MickyView) web application. If you have any questions or need further assistance, feel free to reach out.