Sample models to compare across frameworks. This repository will describe (and eventually host or link to) sample models - 2D and 3D, simple and more complex.
- cell cycle(s): cell growth and division
- cell death(s)
- cell mechanics: adhesion/repulsion
- cell mechanics: spring
- cell motility
- cell secretion
- cell differentiation
- cell phagocytosis
- cell fusion
- cell chemotaxis
- buckling morphogenesis
- monolayer growth without diffusion
- cell sorting
- wound healing
- tumor growth with heterogeneity
- basic immunology: epithelial cells, virus, macrophages, more
- default cell volume (e.g., 2494 microns^3)
- default cell cycle --> growth rate(s)
- default cell division criteria
- default cell death rate(s)
The two animations are not syncronized - the gray-colored cells captures more frames; the colored cells highlight their different volumes.
