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added schema for cholera - initial file #3

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added schema for cholera - initial file #3

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@Segundev Segundev commented Sep 11, 2025

metadata schema for cholera. Initial working file. Susan expected to make changes in the field spelling to ensure consistency

@Segundev
added schema for cholera - initial file
35a7681
@Segundev
cholera schema updated
fc8b3bf
@Segundev
change to yaml file
14c30f7
@Segundev
klebsiella metadata v1
8944a38
@Segundev
removed duplicate missing
e36e35f
@Segundev
added description to both pathogen
6380a54
@Segundev
schema for mpox
2b112e3
@Segundev
removed picklist and change to free text on "prior_antiviral_treatmen…
9263f47 
…t_during_prior_Mpox_infection"
@Segundev
cholera v2 - file being worked on
065fda9
@Segundev
deleted file
b4ad2e0
@Segundev
moved schemas to a schema folder
baf8803
@Segundev
schemas in schema folder
2319e37
@Segundev
muse alternative, tsv to json init
ce695e8
@Segundev
deleted schema made for testing faulty definitions
ac38b39
@Segundev
added schemas for malaria and covid - schemas are still a work in pro…
9024ec3 
…gress
@Segundev
sample data payload
e53dfff
@Segundev
v3 version with array payload - work in progress
f8ffd84
@Segundev
moved files to pathogens folders
1ea3bde
@Segundev
cholera schemas in versions and its own folder
3a14b3d
@Segundev
klebsiella schemas in versions and its own folder
cc7c39d
@Segundev
malaria human schemas in versions and its own folder
5bd005f
@Segundev
malaria vector schemas in versions and its own folder
cdcb547
@Segundev
mpox schemas in versions and its own folder
592303a
@Segundev
sars-cov schemas in versions and its own folder
ff4889a
@Segundev
version 5 schema for cholera and klebsiella - user friendly errors an…
fab7879 
…d regex split
@Segundev
change South_Africa to South Africa
dc1e612
@Segundev
update
991ad5e
@Segundev
sample
9862d8b
@Segundev
rest http
38c1a42
@Segundev
version 5 update
6be8852
@Segundev
custom schema
c55edef
@Segundev
updated v5
c3ecb1d
@Segundev
custom v5
40690d5
@Segundev
rest http
40e8c1d
@Segundev
rest http
4e1e1ae
@Segundev
done with schema update - pending string for empty values - need conf…
adb3804 
…irmation
@Segundev
Extra change to include type and maxlength
ddbd13e
@Segundev
Done with Kleb
1fc0474
@Segundev
done with malaria human
292f275
@Segundev
oneOf on type number
01b1b45
@Segundev
commit customv5 malaria vector
c78baaf
@Segundev
done with malaria vector
b7fabe2
@Segundev
done with mpox
0c27149
@Segundev
done with sars cov
feb0165
@Segundev
changed sequencing to sequence
e6e85f2
@Segundev
ISO Code on provinces
74c6e00
@Segundev
updated schema field names
d703f37
@Segundev
prior_SARS-CoV-2_treatment_agent added antiviral to match template
59e30d3
@Segundev
added fasta_file_name and fasta_header_name
1344bca
@Segundev
added principe to sao tome
ab95d53
@Segundev
remove required from host_disease and host_scientific_name hint text
3ecb8e8
@Segundev
changed date field empty value to type null
3394108
@Segundev
change empty date to type null - malaria vector : change two field na…
8d865e5 
…mes - species and developmental
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@Segundev