tests and doi fix

CONTRIBUTING.md

@@ -5,7 +5,10 @@ Thank you for considering contributing! We welcome all kinds of contributions—
 ---
 
 ## How to Contribute
-Feel free to submit a "pull request" on GitHub in a designated feature branch. Include comments about what the fix/update does.
+Feel free to submit a "pull request" on GitHub in a designated feature branch. Include comments about what the fix/update does, and ensure the tests work by running:
+```python
+states = res.run(timeseries)
+```
 
 For new features, please also consider updating the examples folder to show the intended use of the feature.
 

README.md

@@ -101,6 +101,11 @@ This will return a `np.ndarray` of the same length as the timeseries, correspond
 
 `Incremental` reservoirs run incrementally. For every state, only the last `M` steps of the timeseries is built at a time (`M` being a parameter of `Incremental.__init__`).
 
+## Testing
+Some tests have been implemented using pytest. To run them, ensure pytest is installed (*not* installed as runtime dependency) and run
+```python
+pytest
+```
 ## About
 
 You can find out more about QuantumReservoirPy and contact the authors [here](https://quantumreservoirpy.readthedocs.io/en/latest/about/).

paper.bib

@@ -16,6 +16,7 @@ @InProceedings{trouvain20
 and Pedrelli, Luca
 and Dinh, Thanh Trung
 and Hinaut, Xavier",
+doi = {10.1007/978-3-030-61616-8_40},
 editor="Farka{\v{s}}, Igor
 and Masulli, Paolo
 and Wermter, Stefan",

paper.md

@@ -78,8 +78,7 @@ The processing methods do not affect the creation of the reservoirs, but are inc
 
 ## Dependencies
 
-The three main dependencies of `QuantumReservoirPy` are numpy, qiskit, and scikit-learn.
-We strive for `QuantumReservoirPy` to support compatibility with existing reservoir computing and quantum computing workflows.
+The three main dependencies of `QuantumReservoirPy` are numpy, qiskit, and scikit-learn, with python versions above 3.9. Qiskit is [deprecating](https://github.com/Qiskit/qiskit/releases) python 3.9 support in the 2.1.0 version, and the package presented here is developed to support qiskit=2.0.x. As for the other packages, the supported versions of scikit-learn and numpy follows from their interrelated constraints as well as the constraint from qiskit. In the install script, we specify numpy>1.17. We strive for `QuantumReservoirPy` to support compatibility with existing reservoir computing and quantum computing workflows.
 
 Much of existing research in QRC is performed on IBM devices and simulators (see [@yasuda23; @suzuki22]), programmed through the Qiskit software package. To minimize disruption in current workflows, `QuantumReservoirPy` is built as a package to interact with Qiskit circuits and backends. It is expected that the user also use Qiskit in the customization of reservoir architecture when working with `QuantumReservoirPy`.
 

setup.py

@@ -4,9 +4,9 @@
     "matplotlib",
     "tqdm",
     "pylatexenc>=2.0",
-    "qiskit>=1.0",
+    "qiskit<2.1.0",
     "qiskit-aer>=0.12.0",
-    "numpy>=1.21.6",
+    "numpy>=1.17",
     "scikit-learn",
     "ipykernel"
 ]

tests/test_imports.py

@@ -0,0 +1,7 @@
+def test_import_main():
+    import quantumreservoirpy
+
+def test_import_submodules():
+    from quantumreservoirpy import music
+    from quantumreservoirpy import reservoirs
+    from quantumreservoirpy import plot

tests/test_run.py

@@ -0,0 +1,34 @@
+
+
+def test_incremental():
+    import numpy as np
+    from qiskit.quantum_info import random_unitary
+    from quantumreservoirpy.reservoirs import  Incremental
+
+    encoder = {0: "00", 1: "01", 2: "10", 3: "11"}
+    SHOTS = 100
+
+
+    class RandomUnitary(Incremental):
+        def __init__(self, n_qubits, memory=np.inf, backend=None, num_features=8) -> None:
+            super().__init__(n_qubits, memory, backend, num_features)
+            self.operator = random_unitary(2**n_qubits)
+
+        def before(self, circuit):
+            circuit.h(circuit.qubits)
+
+        def during(self, circuit, timestep, reservoirnumber):
+            circuit.measure([0, 1])
+            circuit.initialize(encoder[timestep], [0, 1])
+            circuit.append(self.operator, circuit.qubits)
+
+        def after(self, circuit):
+            circuit.measure_all()
+
+
+    res = RandomUnitary(n_qubits=4, memory=8)
+
+    timestep = [0, 1, 2, 3, 0, 1, 2, 2, 3]
+    timeseries = timestep * 10
+
+    res.run(timeseries, shots=SHOTS)