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This PR closes #3 by first counting the number of disconnected physical atoms when considering terms to remove for higher order junctions. These are physical atoms that already have no angle or dihedral connections to ghost atoms via the bridge. The avoids the unnecessary removal of additional terms, when the requirement for treatment as a triple order junction is already met.

@lohedges lohedges added the bug Something isn't working label Nov 28, 2025
@lohedges lohedges merged commit 506e506 into devel Nov 28, 2025
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@lohedges lohedges deleted the fix_3 branch November 28, 2025 17:09
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Make higher order junction function independent of atom order

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