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8 changes: 4 additions & 4 deletions docs/source/getting_started.rst
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Expand Up @@ -3,9 +3,9 @@ PolyConstruct

This page details how to get started with *PolyConstruct*.

The design, testing, and validation of *PolyConstruct* is detailed in the manuscript "PolyConstruct:
adapting biomolecular simulation pipelines for polymers with PolyBuild, PolyConf and PolyTop", by
**Rangika Munaweera**, **Ada Quinn**, Luna Morrow, Richard A Morris, Megan L O’Mara
The design, testing, and validation of *PolyConstruct* is detailed in the manuscript *"PolyConstruct:
adapting biomolecular simulation pipelines for polymers with PolyBuild, PolyConf and PolyTop"*, by
***Rangika Munaweera**, **Ada Quinn**, Luna Morrow, Richard A Morris, Megan L O’Mara*

Getting Started
===============
Expand Down Expand Up @@ -87,7 +87,7 @@ For both *PolyBuild* and *PolyTop*, monomer parameters should include all monome
in the simulation model of the final polymer, and dummy atoms correesponding to connectivity with adjacent monomers.
The method for preparing monomer .itp depends on the choice of force field, and a number of suitable automated tools
exist for small molecule parameterization such as the `Automated Topology Builder <https://atb.uq.edu.au>`_,
`antechamber <https://ambermd.org/antechamber/ac.html>`_, and `LigParGen <https://zarbi.chem.yale.edu/ligpargen/>_`.
`antechamber <https://ambermd.org/antechamber/ac.html>`_, and `LigParGen <https://zarbi.chem.yale.edu/ligpargen/>`_.

Monomer coordinates and parameters used as inputs should be designed to reflect the state of the monomer
in the mature polymer chain, rather than the isolated monomer molecule prior to polymerization. For example,
Expand Down