OHDSI · ginberg · Oct 28, 2025 · May 21, 2025 · May 21, 2025 · May 22, 2025
diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
@@ -1,3 +1,3 @@
-Version: 3.11.0
-Date: 2025-09-01 15:11:02 UTC
-SHA: 784c4a8dcda6fc0301c8b0823efdfccb1291745e
+Version: 3.12.0
+Date: 2025-10-28 09:25:00 UTC
+SHA: 0fb802cd699b4e4ec12b59f3d7f232c5d236cecf
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: FeatureExtraction
 Type: Package
 Title: Generating Features for a Cohort
-Version: 3.11.0
-Date: 2025-09-01
+Version: 3.12.0
+Date: 2025-10-28
 Authors@R: c(
   person("Martijn", "Schuemie", , "schuemie@ohdsi.org", role = c("aut")),
   person("Marc", "Suchard", role = c("aut")),

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,8 @@
+FeatureExtraction 3.12.0
+=======================
+
+- Fix non reproducible behavior in removing redundant covariates when they are equally prevalent (#315)
+
 FeatureExtraction 3.11.0
 =======================
 

diff --git a/R/Normalization.R b/R/Normalization.R
@@ -159,7 +159,7 @@ tidyCovariateData <- function(covariateData,
             inner_join(covariateData$valueCounts, by = "covariateId") %>%
             select(.data$analysisId, .data$covariateId, n) %>%
             collect()
-          valueCounts <- valueCounts[order(valueCounts$analysisId, -valueCounts$n), ]
+          valueCounts <- valueCounts[order(valueCounts$analysisId, -valueCounts$n, valueCounts$covariateId), ]
           deleteCovariateIds <- c(deleteCovariateIds, valueCounts$covariateId[!duplicated(valueCounts$analysisId)])
           ignoreCovariateIds <- valueCounts$covariateId
           ParallelLogger::logInfo("Removing ", length(deleteCovariateIds), " redundant covariates")

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html b/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html
diff --git a/docs/articles/CreatingCovariatesUsingCohortAttributes.html b/docs/articles/CreatingCovariatesUsingCohortAttributes.html
diff --git a/docs/articles/CreatingCustomCovariateBuilders.html b/docs/articles/CreatingCustomCovariateBuilders.html
diff --git a/docs/articles/CreatingCustomCovariateBuildersKorean.html b/docs/articles/CreatingCustomCovariateBuildersKorean.html
diff --git a/docs/articles/UsingFeatureExtraction.html b/docs/articles/UsingFeatureExtraction.html
diff --git a/docs/articles/UsingFeatureExtractionKorean.html b/docs/articles/UsingFeatureExtractionKorean.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -8,4 +8,4 @@ articles:
   CreatingCustomCovariateBuildersKorean: CreatingCustomCovariateBuildersKorean.html
   UsingFeatureExtraction: UsingFeatureExtraction.html
   UsingFeatureExtractionKorean: UsingFeatureExtractionKorean.html
-last_built: 2025-09-01T09:33Z
+last_built: 2025-10-28T06:29Z
diff --git a/docs/reference/CovariateData-class.html b/docs/reference/CovariateData-class.html
diff --git a/docs/reference/FeatureExtraction-package.html b/docs/reference/FeatureExtraction-package.html