The Nevada Bioinformatics Center thanks NV INBRE and MW CTR-IN, grants from the National Institute of General Medical Sciences (GM103440 and GM104944) of the National Institutes of Health for their support.
Nevada Bioinformatics Center
Core Facility at the University of Nevada, Reno
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- snakemake_seqmotif_lookup_region_workflow Public
A snakemake workflow for extracting reads from a BAM file aligned to a certain region. Using a motifs.txt file, then per sample count the number of reads with certain motifs.
Nevada-Bioinformatics-Center/snakemake_seqmotif_lookup_region_workflow’s past year of commit activity - snakemake_rnaseq_combined_workflow Public Forked from hans-vg/snakemake_rnaseq_combined_workflow
Snakemake workflow that runs trimmomatic for trimming, and STAR and/or HISAT2 for aligning.
Nevada-Bioinformatics-Center/snakemake_rnaseq_combined_workflow’s past year of commit activity - GitHub-Workshop Public
Nevada-Bioinformatics-Center/GitHub-Workshop’s past year of commit activity - Introduction-R-Workshop Public
Nevada-Bioinformatics-Center/Introduction-R-Workshop’s past year of commit activity - pronghorn_snakemake_config Public
A simple configuration for having snakemake submit jobs to UNRs pronghorn cluster
Nevada-Bioinformatics-Center/pronghorn_snakemake_config’s past year of commit activity - Microbiome_Sanger_Seq Public
Nevada-Bioinformatics-Center/Microbiome_Sanger_Seq’s past year of commit activity - GitHub-Workshop-CL Public
Nevada-Bioinformatics-Center/GitHub-Workshop-CL’s past year of commit activity
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