Home

Welcome to the NanoCommons Ontology Training wiki!

NanoCommons is helping different project as part of offers Transnational Access (TA) to manage their data, create rich metadata to describe the data, annotate it with ontologies and upload it to public data warehouses to allow FAIR sharing. Since these projects

For now, this is just a pile of links to material, we produced in different setting. But we will organize this at one point in time and group it for different levels of expertise and data types.

The Nano Ontology Universe

Diagram to describe the interactions between data providers, domain experts and ontology developers to speed up the integration of new ontology terms envisioned by the NanoCommons project to support the EU NanoSafety Cluster.

Training for beginners:

• ACEnano data warehouse training with a section on ontologies and how they are used in the upload interface.
• Browsing the eNM ontology with BioPortal, AberOWL and Protégé

eNanoMapper ontology training

• Ontology Walkthrough and Workshop, 23 October 2019
  • Introduction
    • Exercise 1: Browsing the eNanoMapper ontology
    • Exercise 2: Browsing with the eNanoMapper ontology
    • Exercise 3: Looking up JRCNM01101a in Scholia
  • Extending the eNanoMapper Ontology
    • Exercise 4: Adding a nanomaterial
    • Exercise 5: Creating an eNanoMapper data set in RDF
• Adding ontology terms

Additional topics

• Ideas to represent complex terms by a combination of existing ontology terms as discussed during the OpenRiskNet project.