DRAFT: Deprecate old evo2 code in favor of mbridge

.devcontainer/framework/devcontainer.json

@@ -42,9 +42,6 @@
 			"settings": {
 				"python.analysis.extraPaths": [
 					"./sub-packages/bionemo-core/src",
-					"./sub-packages/bionemo-llm/src",
-					"./sub-packages/bionemo-testing/src",
-					"./sub-packages/bionemo-example_model/src",
 					"./3rdparty/NeMo",
 					"./3rdparty/Megatron-LM"
 				],

.secrets.baseline

@@ -148,9 +148,9 @@
         "filename": "pyproject.toml",
         "hashed_secret": "79670e9c9d1c7ea5b81a96a2053d81437712c78e",
         "is_verified": false,
-        "line_number": 41
+        "line_number": 37
       }
     ]
   },
-  "generated_at": "2025-12-29T20:49:21Z"
+  "generated_at": "2026-03-04T14:22:49Z"
 }

CODEOWNERS

@@ -58,14 +58,8 @@ ci/ @dorotat-nv @pstjohn @trvachov @jwilber @jomitchellnv @jstjohn
 #
 ## LIBRARY CODE
 #
-sub-packages/bionemo-testing @dorotat-nv @farhadrgh @jstjohn @pstjohn @skothenhill-nv
-
 sub-packages/bionemo-core @DejunL @dorotat-nv @farhadrgh @jstjohn @pstjohn @skothenhill-nv
 
-sub-packages/bionemo-llm @farhadrgh @dorotat-nv @jstjohn @pstjohn @skothenhill-nv
-
-sub-packages/bionemo-example_model @jstjohn @skothenhill-nv
-
 sub-packages/bionemo-scdl @jstjohn @polinabinder1 @skothenhill-nv
 
 sub-packages/bionemo-noodles @skothenhill-nv @jstjohn @edawson @cspades

README.md

@@ -80,13 +80,9 @@ A core use-case of the BioNeMo Framework is to help digital biology scientists a
 <summary><b>(Click to expand) <code>sub-packages</code> models support matrix</b></summary>
 <small>
 
-| Directory               | Description                      | Support        | 5D Parallel | Megatron-FSDP | TE  | Sequence Packing | FP8 | Context Parallel |
-| ----------------------- | -------------------------------- | -------------- | ----------- | ------------- | --- | ---------------- | --- | ---------------- |
-| `bionemo-core`          | Model Config/test data utils     | ✅ Active      | ✅          | N/A           | ✅  | ❌               | N/A | N/A              |
-| `bionemo-evo2`          | 5D parallel model                | ✅ Active      | ✅          | ❌            | ✅  | ❌               | ✅  | ✅               |
-| `bionemo-example_model` | Example 5D parallel model        | 🔧 Maintenance | ✅          | ❌            | ✅  | ❌               | ✅  | ✅               |
-| `bionemo-llm`           | 5D parallel base model (BioBert) | ✅ Active      | ✅          | ❌            | ✅  | ✅               | ✅  | ✅               |
-| `bionemo-testing`       | Testing Utilities                | ✅ Active      | ✅          | N/A           | N/A | N/A              | N/A | N/A              |
+| Directory      | Description                  | Support   | 5D Parallel | Megatron-FSDP | TE  | Sequence Packing | FP8 | Context Parallel |
+| -------------- | ---------------------------- | --------- | ----------- | ------------- | --- | ---------------- | --- | ---------------- |
+| `bionemo-core` | Model Config/test data utils | ✅ Active | ✅          | N/A           | ✅  | ❌               | N/A | N/A              |
 
 </small>
 </details>