[samples] add inference sample for simple snp trainer#128
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ohadmo wants to merge 6 commits intoNVIDIA:dev-v0.1.0from
Open
[samples] add inference sample for simple snp trainer#128ohadmo wants to merge 6 commits intoNVIDIA:dev-v0.1.0from
ohadmo wants to merge 6 commits intoNVIDIA:dev-v0.1.0from
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tijyojwad
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Oct 5, 2020
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| # Create test DAG | ||
| test_dataset = HDFDataLoader(args.test_hdf, batch_size=32, | ||
| shuffle=True, num_workers=args.threads, |
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as I'm thinking about this, I am realizing that we can't use the HDFDataLoader for the inference script here. We'll want to use the ReadPileupDataLoader because that way we'll have access to the Variant entries to serialize outputs to a VCF.
For that one, we also have to set shuffle=False so the inference order is the same as the VCF entries order.
…erence-sample-snp-trainer
…/inference-sample-snp-trainer
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Resolves #110 & #107