The files to recreate the REDCap project used to capture clinical information are in the clinical_*.csv files. Additionally you will need to make the following instruments repeatable
| Event | Instrument | Type |
|---|---|---|
| Baseline | Repeat Instruments | Bal Sample , Blood Sample Type |
| Pneumonia Episode | Repeat Instruments | Pneumonia Episode Category,Pneumonia Episode Outcome |
| Bal | Repeat Instruments | Bal Sample , Blood Sample Type |
The files to recreate the REDCap project used to capture sample analysis information are in the 'sample_*.csv' files. There are no events in this projects but you will need to make the following instruments repeatable.
| Instrument | Type |
|---|---|
| Repeat Instruments | RNA |
| Repeat Instruments | Library Prep |
| Repeat Instruments | RNA Non-Tregs CD4+ |
| Repeat Instruments | RNA Tregs |
| Repeat Instruments | RNA CD8+ |
| Repeat Instruments | RNA Bulk CD4+ |
| Repeat Instruments | RNA-seq Library Prep Non-Tregs CD4+ |
| Repeat Instruments | RNA-seq Library Prep Tregs |
| Repeat Instruments | RNA-seq Library Prep CD8+ |
| Repeat Instruments | RNA-seq Library Prep Bulk CD4+ |
| Repeat Instruments | DNA Non-Tregs CD4+ |
| Repeat Instruments | DNA Tregs |
| Repeat Instruments | DNA CD8+ |
| Repeat Instruments | DNA Bulk CD4+ |
The files to recreate the REDCap project used to capture sample analysis information are in the 'microbio_*.csv' files. There are no events or repeating instruments in this project.