PGCoE Genomic Epidemiology - analytic tools

Repository for tools looking at the genomic epi simulations

Tabletop support

Generic visualization

• tree_generation_demo: Make a tree and color nodes based on different sampling frames

Documentation

Important sources files and configuration for context

• Run for generating the linelist: /sfs/gpfs/tardis/project/bii_nssac/biocomplexity/vdh_genomics/synthetic_biosurveillance/SARS-Cov2-Biosurveillance-Simulation/test/run.03.vadelta.b