refactor: implement an updated parser [WIP]

.editorconfig

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+# see http://editorconfig.org
+root = true
+
+[*]
+charset = utf-8
+end_of_line = lf
+indent_size = 4
+indent_style = space
+insert_final_newline = true
+trim_trailing_whitespace = true
+
+[*.{bat,cmd,ps1}]
+end_of_line = crlf
+indent_style = tab
+
+[*.{yml,json}]
+indent_size = 2
+
+[*.{md,rst}]
+trim_trailing_whitespace = false
+
+[Makefile]
+indent_style = tab

.gitattributes

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+src/brenda_parser/_version.py export-subst

.gitignore

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+# Created by .ignore support plugin (hsz.mobi)
+### Python template
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+# Project settings
+src/brenda_parser/parsing/lextab.py
+src/brenda_parser/parsing/parser.out
+src/brenda_parser/parsing/parsetab.py

.travis.yml

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+language: python
+sudo: false
+python:
+  - '2.7'
+  - '3.5'
+  - '3.6'
+  - '3.7-dev'
+cache:
+  pip: true
+git:
+  depth: 2
+env:
+  global:
+    - GITHUB_REPO=Midnighter/BRENDA-Parser
+    - LD_PRELOAD=/lib/x86_64-linux-gnu/libSegFault.so
+    - SEGFAULT_SIGNALS=all
+branches:
+  only:
+  - master
+  - develop
+  - "/^\\d+\\.\\d+\\.\\d+[a]?\\d*$/"
+matrix:
+  fast_finish: true
+before_install:
+  - python --version
+  - uname -a
+  - lsb_release -a
+install:
+  - pip install --upgrade pip setuptools wheel tox tox-travis
+script:
+  - tox -- --cov-report xml --cov-report term
+  - bash <(curl -s https://codecov.io/bash)
+
+stages:
+- test
+- name: deploy
+  if: tag IS present
+
+jobs:
+  include:
+  - stage: deploy
+    before_install: skip
+    install: skip
+    script:
+    - echo "Deploying brenda-parser."
+    deploy:
+    - provider: pypi
+      skip_cleanup: true
+      user: midnighter
+      password: $PYPI_PASSWORD
+      on:
+        tags: true
+        repo: $GITHUB_REPO
+    - provider: releases
+      skip_cleanup: true
+      api_key: $GITHUB_TOKEN
+      body: "Please see https://github.com/${GITHUB_REPO}/blob/${TRAVIS_TAG}/CHANGELOG.rst for the full release notes."
+      on:
+        tags: true
+        repo: $GITHUB_REPO
+
+notifications:
+  email:
+    on_success: never
+    on_failure: always
+    on_pull_requests: false

AUTHORS.rst

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+
+Authors
+=======
+
+* `Moritz E. Beber <moritz.beber@gmail.com>`_

CHANGELOG.rst

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+
+Changelog
+=========
+
+0.1.0 (2018-01-30)
+------------------
+
+* First release on PyPI.

CONTRIBUTING.rst

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+============
+Contributing
+============
+
+Contributions are welcome, and they are greatly appreciated! Every
+little bit helps, and credit will always be given.
+
+Bug reports
+===========
+
+When `reporting a bug <https://github.com/Midnighter/BRENDA-Parser/issues>`_ please include:
+
+    * Your operating system name and version.
+    * Any details about your local setup that might be helpful in troubleshooting.
+    * Detailed steps to reproduce the bug.
+
+Documentation improvements
+==========================
+
+BRENDA-Parser could always use more documentation, whether as part of the
+official BRENDA-Parser docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+Feature requests and feedback
+=============================
+
+The best way to send feedback is to file an issue at https://github.com/Midnighter/BRENDA-Parser/issues.
+
+If you are proposing a feature:
+
+* Explain in detail how it would work.
+* Keep the scope as narrow as possible, to make it easier to implement.
+* Remember that this is a volunteer-driven project, and that code contributions are welcome :)
+
+Development
+===========
+
+To set up `BRENDA-Parser` for local development:
+
+1. Fork `BRENDA-Parser <https://github.com/Midnighter/BRENDA-Parser>`_
+   (look for the "Fork" button).
+2. Clone your fork locally::
+
+    git clone git@github.com:your_name_here/BRENDA-Parser.git
+
+3. Create a branch for local development::
+
+    git checkout -b name-of-your-bugfix-or-feature
+
+   Now you can make your changes locally.
+
+4. When you're done making changes, run all the checks, doc builder and spell checker with `tox <http://tox.readthedocs.io/en/latest/install.html>`_ one command::
+
+    tox
+
+5. Commit your changes and push your branch to GitHub::
+
+    git add .
+    git commit -m "Your detailed description of your changes."
+    git push origin name-of-your-bugfix-or-feature
+
+6. Submit a pull request through the GitHub website.
+
+Pull Request Guidelines
+-----------------------
+
+If you need some code review or feedback while you're developing the code just make the pull request.
+
+For merging, you should:
+
+1. Include passing tests (run ``tox``) [1]_.
+2. Update documentation when there's new API, functionality etc.
+3. Add a note to ``CHANGELOG.rst`` about the changes.
+4. Add yourself to ``AUTHORS.rst``.
+
+.. [1] If you don't have all the necessary python versions available locally you can rely on Travis - it will
+       `run the tests <https://travis-ci.org/Midnighter/BRENDA-Parser/pull_requests>`_ for each change you add in the pull request.
+
+       It will be slower though ...
+
+Tips
+----
+
+To run a subset of tests::
+
+    tox -e envname -- py.test -k test_myfeature
+
+To run all the test environments in *parallel* (you need to ``pip install detox``)::
+
+    detox

LICENSE

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+Copyright (c) 2013 Jacobs University Bremen gGmbH
+Copyright (c) 2018 Moritz E. Beber
+
+Redistribution and use in source and binary forms, with or without modification,
+are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+this list of conditions and the following disclaimer in the documentation and/or
+other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors
+may be used to endorse or promote products derived from this software without
+specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

MANIFEST.in

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+include versioneer.py
+include src/brenda_parser/_version.py