Data Formats

Jump to bottom Edit New page

murraycadzow edited this page Dec 3, 2015 · 1 revision

VCF

Specification

https://vcftools.github.io/specs.html

PLINK

PED/MAP or BED/BIM/FAM

Specification

https://www.cog-genomics.org/plink2/formats#bed

http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#ped

SAM/BAM

Specification

https://samtools.github.io/hts-specs/

BED and GTF/GFF

Specification

BED http://asia.ensembl.org/info/website/upload/bed.html

GTF/GFF http://asia.ensembl.org/info/website/upload/gff.html

#FASTA/FASTQ

Specification

FASTA https://en.wikipedia.org/wiki/FASTA_format

FASTQ https://en.wikipedia.org/wiki/FASTQ_format