add script for downloading BCSS dataset (resolves #5) #31
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The Breast Cancer Semantic Segmentation (BCSS) dataset is licensed under a CC0 1.0 Universal (CC0 1.0) license, allowing redistribution. Creating a mirror for it on Hugging Face (HF) and downloading from there allows for a simple, 3-line bash script.
Usage
chmod +x tools/download_bcss.shbash tools/download_bcss.shN_DATA_WORKERS=1 eva predict_fit --config configs/vision/pathology/offline/segmentation/bcss.yamlNote: For local evaluation, I specified that N_DATA_WORKERS should be 1 when calling
eva predict_fit(as opposed to the default of 4 in the .yaml file), and let the process run overnight, to get the following results.Results