Add ivr indicators tools

.github/workflows/pr.yaml

@@ -4,7 +4,7 @@ env:
   GALAXY_FORK: galaxyproject
   GALAXY_BRANCH: release_21.09
   MAX_CHUNKS: 4
-  MAX_FILE_SIZE: 1M
+  MAX_FILE_SIZE: 20M
 concurrency:
   # group runs by PR, but keep runs on master separate
   # because we do not want to cancel toolshed uploads
@@ -191,15 +191,15 @@ jobs:
     - name: lintr
       run: |
         library(lintr)
-        linters <- with_defaults(line_length_linter = NULL, cyclocomp_linter = NULL, object_usage_linter = NULL)
+        linters <- linters_with_defaults(line_length_linter = NULL, cyclocomp_linter = NULL, object_usage_linter = NULL)
         con <- file("repository_list.txt", "r")
         status <- 0
         while (TRUE) {
           repo <- readLines(con, n = 1)
           if (length(repo) == 0) {
              break
           }
-          lnt <- lint_dir(repo, relative_path=T, linters=linters)
+          lnt <- lint_dir(repo, relative_path=T, linters=linters, exclusions=list("tools/SRS_tools/comparison_div.r"=c(153, 160)))
           if (length(lnt) > 0) {
             status <- 1
             for (l in lnt) {

tools/SRS_tools/.shed.yml

@@ -0,0 +1,14 @@
+categories:
+    - Ecology
+owner: ecology
+remote_repository_url: https://github.com/Marie59/Sentinel_2A/SRS_tools
+long_description: |
+  Compute biodiveristy indicators from Sentinel 2 remote sensing data
+type: unrestricted
+auto_tool_repositories:
+  name_template: "{{ tool_id }}"
+  description_template: "Wrapper for spatial remote sensing tool: {{ tool_name }}."
+suite:
+  name: "Sentinel_2A"
+  description: "A suite of indicators for remote sensing data"
+  type: unrestricted