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@sophiamaedler sophiamaedler commented Nov 6, 2025

Aim of this PR is to add a tutorial that shows how you can annotate regions in scPortrait. It will implement additonal functions required to streamline this functionality.

New Features:

  • update adata.obs to disk
  • add plotting support for non memory backed h5sc files
  • add functions to subset h5sc objects according to cell_id (a new h5sc is written to disk)
  • improve h5sc tests

Bug Fixes:

  • correctly read dimensions to generate a new axes object when plotting a spatialdata shapes layer

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scPortrait_demo_annotate_regions.ipynb

current tutorial covering the newly implemented functions

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