Br_Microbe_Paper_2025

Repository for code related to paper XXX et_al

This repository contains code and data (or links to data) that will enable recreations of the figures and tables for XXX et al.

Organization:

• _Paper_Tables: raw tables (csv, etc) and final formatted tables.
• _Paper_Figures: figures and retouched (Illustrator) figures
• annotation: Files related to gene annotation
• metabolites: Files related to metabolite data and analysis
• microbes: Files related to microbe data and analysis
• plant: Files related to (non-molecular) plant data and analysis
• RNA: Files related to RNA data an analysis

Within each of annotation, metabolites, microbes, plant, and RNA:

• input: folder for input data used by scripts
• scripts
• output: folder for intermediate output data (other than final tables and figures)