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@jylee-bcm jylee-bcm commented Jul 31, 2025

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johnathan and others added 30 commits November 13, 2024 02:19
…edictnew

Update Scikit Learn to >=1.3.0 and Stop Using predict_new/
hgmd merge_expand data generation
Model interpretability
Disable LIME analysis as it takes too long time
Validate VCF First Before Preprocessing
Add --input_variant parameter for handling single variant
jylee-bcm and others added 24 commits May 23, 2025 10:54
…pedigree-file-to-have-proband-information-at-the-last-row

18 vcf pre process trio requires pedigree file to have proband information at the last row
…-requires-pedigree-file-to-have-proband-information-at-the-last-row

Revert "18 vcf pre process trio requires pedigree file to have proband information at the last row"
…ocess_trio-requires-pedigree-file-to-have-proband-information-at-the-last-row

Improve PED file parser for Trio
Publish manifest.json including version information
Save Git Hash and Checksize on Result Directory
Apply lenient validation to accept integer run_id
Substitute extensive params with PREPARE_DATA subworkflow
@jylee-bcm jylee-bcm requested a review from hyunhwan-bcm July 31, 2025 16:51
@jylee-bcm jylee-bcm marked this pull request as ready for review August 1, 2025 17:21
@jylee-bcm jylee-bcm merged commit f4afd48 into main Aug 1, 2025
4 of 6 checks passed
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6 participants