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pipeline to analyze skilled reaching videos to acquisition through deeplabcut and 3D reconstruction

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.idea
.idea
 
 
.ipynb_checkpoints
.ipynb_checkpoints
 
 
__pycache__
__pycache__
 
 
AniposeCalibrate_README.pdf
AniposeCalibrate_README.pdf
 
 
Leventhal 3660.pdf
Leventhal 3660.pdf
 
 
New sizes for intermediate-fixed margins.pdf
New sizes for intermediate-fixed margins.pdf
 
 
README.md
README.md
 
 
Untitled.ipynb
Untitled.ipynb
 
 
analyze_3d_recons.py
analyze_3d_recons.py
 
 
anipose_utils.py
anipose_utils.py
 
 
aniposefilter_pose.py
aniposefilter_pose.py
 
 
boards.py
boards.py
 
 
calib_test.ipynb
calib_test.ipynb
 
 
camera_intrinsics_anipose_test.ipynb
camera_intrinsics_anipose_test.ipynb
 
 
cameras.py
cameras.py
 
 
charuco_100x70_10x7_10_7_DICT_4x4_50_600dpi.tiff
charuco_100x70_10x7_10_7_DICT_4x4_50_600dpi.tiff
 
 
charuco_70x100_7x10_10_7_DICT_4x4_50_600dpi.tiff
charuco_70x100_7x10_10_7_DICT_4x4_50_600dpi.tiff
 
 
check_cb_id.ipynb
check_cb_id.ipynb
 
 
common.py
common.py
 
 
compute_angles.py
compute_angles.py
 
 
computer_vision_basics.py
computer_vision_basics.py
 
 
create_evaluation_csv.py
create_evaluation_csv.py
 
 
crop_Burgess_videos.py
crop_Burgess_videos.py
 
 
crop_videos.py
crop_videos.py
 
 
dlc_utilities.py
dlc_utilities.py
 
 
fund_mat_from_mouse_vid_folder.m
fund_mat_from_mouse_vid_folder.m
 
 
fund_mat_from_mouse_vids.m
fund_mat_from_mouse_vids.m
 
 
fund_mat_from_vids.m
fund_mat_from_vids.m
 
 
integrate_phys_kinematics.py
integrate_phys_kinematics.py
 
 
navigation_utilities.py
navigation_utilities.py
 
 
optitrack_calibration_testing.ipynb
optitrack_calibration_testing.ipynb
 
 
photometry_analysis.py
photometry_analysis.py
 
 
photometry_analysis_plots.py
photometry_analysis_plots.py
 
 
photometry_io_skilledreaching.py
photometry_io_skilledreaching.py
 
 
plot_utilities.py
plot_utilities.py
 
 
rat_df_code.docx
rat_df_code.docx
 
 
reconstruct_3d.py
reconstruct_3d.py
 
 
reconstruct_3d_optitrack.py
reconstruct_3d_optitrack.py
 
 
script_fundamental_matrix_from_videos.m
script_fundamental_matrix_from_videos.m
 
 
skilled_reaching_calibration.py
skilled_reaching_calibration.py
 
 
skilled_reaching_io.py
skilled_reaching_io.py
 
 
skilled_reaching_workflow.py
skilled_reaching_workflow.py
 
 
skilled_reaching_workflow_Burgess.py
skilled_reaching_workflow_Burgess.py
 
 
sr_analysis.py
sr_analysis.py
 
 
sr_behavior_summary.py
sr_behavior_summary.py
 
 
sr_photometry_analysis.py
sr_photometry_analysis.py
 
 
sr_visualization.py
sr_visualization.py
 
 
stereo_calibrate_from_vidframe.ipynb
stereo_calibrate_from_vidframe.ipynb
 
 
train_autoencoder.py
train_autoencoder.py
 
 
utils.py
utils.py
 
 

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skilled_reaching_pipeline

pipeline to analyze skilled reaching videos to acquisition through deeplabcut and 3D reconstruction

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pipeline to analyze skilled reaching videos to acquisition through deeplabcut and 3D reconstruction

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