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Surveillance testing of SARS-CoV-2

This repository contain code to accompany the manuscript Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance by Daniel B. Larremore, Bryan Wilder, Evan Lester, Soraya Shehata, James M. Burke, James A. Hay, Milind Tambe, Michael J. Mina, Roy Parker.

The code requires:

  • python
  • numpy
  • matplotlib

Please see Example Calculations.ipynb for example calculations related to the manuscript.

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  • Jupyter Notebook 80.9%
  • Python 19.1%