PyPI package for Khoca

.github/workflows/build_wheels.yml

@@ -0,0 +1,53 @@
+name: Reusable workflow for cibuildwheel
+
+on:
+  workflow_call:
+    inputs:
+      operating-systems:
+        default: >-
+          ["ubuntu"]
+        type: string
+        required: true
+      system-versions:
+        default: >-
+          ["latest"]
+        type: string
+        required: true
+jobs:
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}-${{ matrix.version }}
+    runs-on: ${{ matrix.os }}-${{ matrix.version }}
+    strategy:
+      matrix:
+        os: ${{ fromJson(inputs.operating-systems) }}
+        version: ${{ fromJson(inputs.system-versions) }}
+    env:
+      CIBW_SKIP: cp37-macosx_x86_64
+      CIBW_REPAIR_WHEEL_COMMAND_MACOS: "export MACOSX_DEPLOYMENT_TARGET=${{ matrix.version }}.0; delocate-wheel --require-archs {delocate_archs} -w {dest_dir} -v {wheel}"
+
+    steps:
+      - uses: actions/checkout@v4
+
+      # Used to host cibuildwheel
+      - uses: actions/setup-python@v5
+
+      - name: Install cibuildwheel
+        run: python -m pip install cibuildwheel==2.22.0
+
+      - name: Build wheels
+        run: python -m cibuildwheel --output-dir wheelhouse
+
+      - name: Analyse
+        if: always()
+        run: sh analyse.sh
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: khoca.tar
+          path: /Users/runner/work/khoca/khoca.tar
+        if: always()
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: ./wheelhouse/*.whl

.github/workflows/build_wheels_linux.yml

@@ -0,0 +1,23 @@
+name: Build wheels Linux
+
+on:
+  push:
+    tags:
+      - "*" # Push events of new tags
+  workflow_dispatch:
+    # Allow to run manually
+
+jobs:
+  build_wheels:
+    uses: ./.github/workflows/build_wheels.yml
+    with:
+      operating-systems: >-
+        ["ubuntu"]
+      system-versions: >-
+        ["latest"]
+
+  pypi-publish:
+    name: Upload wheels to PyPI
+    needs: build_wheels
+    uses: ./.github/workflows/publish_pypi.yml
+    secrets: inherit

.github/workflows/build_wheels_macos.yml

@@ -0,0 +1,41 @@
+name: Build wheels MacOS
+
+on:
+  push:
+    tags:
+      - "*" # Push events of new tags
+  workflow_dispatch:
+    # Allow to run manually
+
+jobs:
+  build_wheels:
+    uses: ./.github/workflows/build_wheels.yml
+    with:
+      operating-systems: >-
+        ["macos"]
+      system-versions: >-
+        ["13", "14"]
+
+  pypi-publish:
+    # https://github.com/pypa/gh-action-pypi-publish
+    name: Upload wheels to PyPI
+    needs: build_wheels
+    runs-on: ubuntu-latest
+    env:
+      CAN_DEPLOY: ${{ secrets.PYPI_TOCKEN_KHOCA != '' }}
+    steps:
+
+      - uses: actions/download-artifact@v4
+        with:
+          pattern: cibw-wheels*
+          path: wheelhouse
+          merge-multiple: true
+
+      - name: Publish package distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI_TOKEN_KHOCA }}
+          packages_dir: wheelhouse/
+          skip_existing: true
+          verbose: true

.github/workflows/build_wheels_windows.yml

@@ -0,0 +1,58 @@
+name: Build wheels Windows
+
+on:
+  push:
+    tags:
+      - "*" # Push events of new tags
+  workflow_dispatch:
+    # Allow to run manually
+
+jobs:
+  build_wheels:
+    name: Build Windows wheels for 64 bit Python
+    runs-on: windows-latest
+    defaults:
+      run:
+        shell: msys2 {0}
+
+    steps:       
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        name: Install a Python to use for building
+        with:
+          python-version: '3.12'
+
+      - uses: msys2/setup-msys2@v2
+        name: Setup an msys2 environment
+        with:
+          msystem: UCRT64
+          release: false
+          install: >-
+            base-devel
+            m4
+            bison
+            make
+            patch
+            sed
+            mingw-w64-x86_64-toolchain
+            mingw-w64-x86_64-gmp
+          pacboy: gcc:p
+          path-type: inherit
+
+      - name: Install cibuildwheel
+        run: |
+          python -m pip install cibuildwheel==2.20.0
+
+      - name: Build many wheels
+        run: |
+          python -m cibuildwheel --output-dir wheelhouse
+
+      - name: Analyse
+        if: always()
+        run: sh analyse.sh
+
+      - uses: actions/upload-artifact@v4
+        name: Save the wheels as artifacts
+        with:
+          path: ./wheelhouse/*.whl

.github/workflows/publish_pypi.yml

@@ -0,0 +1,25 @@
+name: Reusable workflow to publish to PyPI
+
+on:
+  workflow_call:
+
+jobs:
+  pypi-publish:
+    # https://github.com/pypa/gh-action-pypi-publish
+    name: Upload wheels to PyPI
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          pattern: cibw-wheels*
+          path: wheelhouse
+          merge-multiple: true
+
+      - name: Publish package distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI_TOKEN_KHOCA }}
+          packages_dir: wheelhouse/
+          skip_existing: true
+          verbose: true

.github/workflows/publish_source_pypi.yml

@@ -0,0 +1,26 @@
+name: Publish sources to PyPI
+
+on:
+  workflow_dispatch:
+
+jobs:
+  publish-sources:
+    name: Upload source distro to PyPI
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+    - run: git fetch --depth=1 origin +refs/tags/*:refs/tags/*
+    - uses: actions/setup-python@v5
+    - name: Prepare
+      run: |
+        python -m pip install --upgrade pip
+        pip install cython setuptools
+    - name: Create distribution
+      run: python3 setup.py sdist
+    - name: Publish distro to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_TOKEN_KHOCA }}
+        packages_dir: dist/
+        verbose: true

.github/workflows/run_tests.yml

@@ -34,4 +34,7 @@ jobs:
       - name: Run Test
         id: run_test
         run: |
-          ./khoca.py 0 0.0 0 braidaBaB calc0 | grep -c "t^-2q^4 + t^-1q^2 + t^0q^0 + t^1q^-2 + t^2q^-4"
+          RES=$(./khoca.py 0 0.0 0 braidaBaB calc0)
+          echo "RES: $RES"
+          echo $RES | grep -c "t^-2q^4 + t^-1q^2 + t^0q^0 + t^1q^-2 + t^2q^-4"
+          echo $RES | grep -c "t^-2q^5 + t^-1q^1 + t^0q^-1 + t^0q^1 + t^1q^-1 + t^2q^-5 + t^-1q^3\[2\] + t^2q^-3\[2\]"

Dockerfile

@@ -14,10 +14,12 @@ ENV LANG C.UTF-8
 ENV SHELL /bin/bash
 # install prerequisites
 RUN apt-get -qq update \
-    && apt-get -qq install -y --no-install-recommends git g++ make libgmp-dev pari-gp2c python3 python3-dev python3-pip \
+    && apt-get -qq install -y --no-install-recommends git g++ make libgmp-dev pari-gp2c python3 python3-dev pipx python-is-python3\
     && apt-get -qq clean \
     && rm -r /var/lib/apt/lists/* \
-    && pip install cython \
+    && pipx install cython \
+    && pipx ensurepath \
+    && export PATH="$PATH:/root/.local/bin" \
     && git clone https://github.com/soehms/khoca.git \
     && cd khoca/ \
     && make

MANIFEST.in

@@ -0,0 +1 @@
+include data/ src/*/*.h src/*.h src/*/*.cpp src/*/*.pyx