Code refactoring, add OMP for parallel computation, fix warnings

[tigerjack]

Changelog

Build

• Transition to CMake: Migrated from Makefile to CMakeLists for a more robust and flexible build configuration.
• Compile Warnings Resolved: Addressed and resolved all previously existing compile warnings, ensuring cleaner builds and improved code quality.

Project Structure

• Reorganized Source Files: Separated source files (.cpp) and header files (.hpp) into distinct directories for better organization.
• Dedicated Tools Directory: Moved utility tools to a dedicated bin directory for clearer structure and easier access.

Features and Enhancements

work_factor_computation and isd_computation

• Algorithm Class Improvements: Introduced new (Quantum)Algorithm classes with support for easy enabling/disabling through whitelist filters, enhancing modularity and configurability.
• Parallel Computation with OMP: Added OpenMP (#pragma omp) directives to enable parallel computation, significantly improving performance for computationally intensive tasks.
• Input management: The work factor computation function now accepts input in both plain text and JSON formats.
• Output management: The function outputs a JSON file with more structured and detailed information on the results of a computation