Release v0.2.4

What's Changed

• Docker tag with release version by @bergsalex in #113
• Improvements to submit script and fixes/improvements to sumner2 profile by @bergsalex in #116
• Task/update jabs postprocess version by @bergsalex in #117

Full Changelog: v0.2.3...v0.2.4

Release v0.2.3

What's Changed

• Adding resource tag for filtering task by @SkepticRaven in #112

Full Changelog: v0.2.2...v0.2.3

Release v0.2.2

What's Changed

• Bump nextflow workflow version along with release version by @bergsalex in #110

Full Changelog: v0.2.1...v0.2.2

Release v0.2.1

What's Changed

• Fix image reference and bump patch version by @bergsalex in #109

Full Changelog: v0.2.0...v0.2.1

Release v0.2.0

What's Changed

• Update mouse-tracking-runtime images to v0.1.4 by @bergsalex in #98
• Fixing change to channel name by @SkepticRaven in #100
• Fix support_code_dir value and bump postprocess image version by @bergsalex in #101
• Task/fix tracklet generation bug by @bergsalex in #103
• Adds back in config settings for rendering by @SkepticRaven in #104
• Klaus 194 nextflow tests by @SkepticRaven in #93
• Klaus 280 discard pose data when convex hull is larger than expected mouse size by @SkepticRaven in #92
• Bugfix/85 optional args are not always optional by @bergsalex in #105
• Klaus 65 integrate bout stats by @SkepticRaven in #106
• Fix edge cases for empty detection sets in vectorized matching by @bergsalex in #107
• Add SAP, Jumping, and Freezing classifier to sumner2 default profile by @bergsalex in #108
• Prepare for v0.2.0 release by @bergsalex in #102

Full Changelog: v0.1.4...v0.2.0

Release v0.1.4

What's Changed

• Fix rclone singularity definition by @bergsalex in #99

Full Changelog: v0.1.3...v0.1.4

Release v0.1.3

What's Changed

• Fix single-mouse-corrected-corners workflow by @bergsalex in #86
• Switch from readLines to splitText in single-mouse-corrected-corners by @bergsalex in #88
• Update singularity image locations for sumner2 by @bergsalex in #87
• Fix command calls in jabs_classifiers nextflow module by @bergsalex in #90
• Klaus 277 bug patches by @SkepticRaven in #91
• First draft of classifier generation pipeline by @bergsalex in #89
• Update GENERATE_BEHAVIOR_TABLES to match updated generate-tables args by @bergsalex in #94
• Pipe generate-classifiers config json to a file by @bergsalex in #95
• Switch to safe jabs behavior key by @bergsalex in #96
• Multiple fixes related to sumner2 config and docker image by @bergsalex in #97

Full Changelog: v0.1.2...v0.1.3

Release v0.1.2

What's Changed

• Adding resource estimations for multimouse tasks by @SkepticRaven in #58
• Changing the folder where singularity copies models by @SkepticRaven in #77
• Add nextflow process to merge bout tables by behavior by @bergsalex in #73
• Klaus 232 rclone conf visibility by @SkepticRaven in #78
• Yoda 168 add error handling for tasks that fail by @SkepticRaven in #79
• Yoda 205 compression inspection by @SkepticRaven in #71
• Publishing compressed video data into the output folder by @SkepticRaven in #80
• Klaus 267 compression resource config by @SkepticRaven in #82
• Add docstrings to nextflow functions, modules, and workflows by @SkepticRaven in #62
• Organize all singularity definitions into vm directory by @bergsalex in #81
• Bugfix/incorrect output handling merge tables by @bergsalex in #83
• Casting a potential string object to file to access baseName by @SkepticRaven in #84

Full Changelog: v0.1.1...v0.1.2

Release v0.1.1

What's Changed

• Yoda 128 build new cli module for mouse tracking runtime by @bergsalex in #36
• Implement the CLI interfaces for infer CLI commands. by @bergsalex in #37
• Shorten package name by @bergsalex in #41
• Refactoring pose utilities and adding tests by @bergsalex in #42
• Move all code files that aren't top level files by @bergsalex in #43
• Implement single pose qa by @bergsalex in #44
• Specifying tf torch and jax related dependencies and updating lock file by @bergsalex in #45
• Migrate remaining commands by @bergsalex in #46
• Reconcile dependencies with colab and add dockerfile by @bergsalex in #49
• Improve efficiency of Tracklet Generation by @bergsalex in #48
• Update CLI tests for Utils commands by @bergsalex in #51
• Tests for segmentation utils by @bergsalex in #50
• Migrate inference commands by @bergsalex in #52
• Updating nextflow command calls to use new Typer CLI by @bergsalex in #53
• Improve generate tracklets performance by @bergsalex in #55
• Lint and Format fixes for matching code and tests. by @bergsalex in #57
• Yoda 220 Automated Fixes for Formatting/Linting Errors by @bergsalex in #66
• Yoda 220 Manual Fixes for Linting Errors by @bergsalex in #67
• Update singularity and docker images to remove Google Colab dependency by @bergsalex in #65
• Yoda 219 Make Model Directory Location Configurable with Environment Variable by @bergsalex in #68
• Cleanup Before Reorganization PR by @bergsalex in #70
• Task/add GitHub actions by @bergsalex in #69
• Repository reorganization by @bergsalex in #72
• Remote nextflow hooks by @SkepticRaven in #54
• Task/add release pipeline on main branch by @bergsalex in #76

Full Changelog: 0.0.2...v0.1.1

0.0.2

This is the last release prior to our repository reorganization work.

What's Changed

• Yoda 47 Add pipeline input checks by @bergsalex in #34
• YODA-81 Organize Default Data location on Sumner Profile by @bergsalex in #33
• Adding JABS license to make public. by @SkepticRaven in #38
• Moving license to main folder by @SkepticRaven in #39
• Add pose file format documentation based on existing confluence docs by @bergsalex in #35
• Yoda 113 update multi mouse workflow based on single mouse knowledge by @SkepticRaven in #40
• Adding mit-licensed model definition code from original hrnet. by @SkepticRaven in #47
• Fixing resource retry calculation for GENERATE_FLEXIBILITY_INDEX process by @bergsalex in #59
• Optimizing reading of seg data by @SkepticRaven in #61
• Multimouse seg shape by @SkepticRaven in #56
• Adding code to handle when prediction_matrix is None by @bergsalex in #60
• Updating README and submission scripts by @bergsalex in #63

Full Changelog: 0.0.1...0.0.2