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Merged
KamilSJaron merged 38 commits into from
Feb 10, 2026
Merged

Merge for next tagged release #251

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798d2c9
Edit homepage and description
samebdon Nov 25, 2025
9089335
Update README.md
samebdon Dec 1, 2025
5e5b4b9
Update pyproject.toml
samebdon Dec 1, 2025
f03782e
Merge branch 'master' into dev
samebdon Dec 1, 2025
f272203
Create build_pip.yml
samebdon Dec 2, 2025
d165185
Delete .github/workflows/build_pip.yml
samebdon Dec 2, 2025
4309bde
Update build.yml
samebdon Dec 2, 2025
98ec225
adding a rule on creating the directory if does not exist yet
KamilSJaron Dec 3, 2025
bf80e7f
develop->dev in build.yml
samebdon Dec 3, 2025
f5a8617
amend setup.py to force BinaryDistribution
samebdon Dec 3, 2025
89f8dfc
Merge pull request #239 from KamilSJaron/test-cibuildwheel
samebdon Dec 3, 2025
990ae29
Min macosx deployment target for c libraries in pyproject.toml
samebdon Dec 3, 2025
1fa9fc0
Merge pull request #240 from KamilSJaron/test-cibuildwheel
samebdon Dec 3, 2025
85568d5
Update README.md
samebdon Dec 4, 2025
286e5d8
Update README.md
samebdon Dec 4, 2025
045486e
Merge pull request #241 from KamilSJaron/dev
samebdon Dec 4, 2025
569e7b0
Update publish.yml with pypi pwd from secrets
samebdon Dec 4, 2025
8711c80
minimum required macos dev target
samebdon Dec 4, 2025
5548007
beta testing 0.5.3b for pypi
samebdon Dec 4, 2025
7655bb4
args.format -> plot task
samebdon Dec 4, 2025
0b3bd5f
version -> 3b
samebdon Dec 4, 2025
67e6c5b
svg support for people who really want it
samebdon Dec 4, 2025
268a412
Merge pull request #242 from KamilSJaron/test-cibuildwheel
samebdon Dec 4, 2025
56d4dc6
updating macos-13 to macos-15-intel due to depreciation
samebdon Dec 4, 2025
7b9b007
macos-13 depreciation
samebdon Dec 4, 2025
e6b1971
Merge pull request #243 from KamilSJaron/test-cibuildwheel
samebdon Dec 4, 2025
76378b4
python 3.13 and 3.14
samebdon Dec 4, 2025
ab41041
python 3.13 and 3.14
samebdon Dec 4, 2025
13ee31e
Update README.md
samebdon Dec 4, 2025
f45d5b8
Update pyproject.toml
samebdon Dec 4, 2025
2dbeb10
Merge pull request #244 from KamilSJaron/test-cibuildwheel
samebdon Dec 4, 2025
1356735
Typo cli.py
samebdon Dec 4, 2025
95f9621
remove dev branch build and testing
samebdon Dec 4, 2025
8e1e44d
API token obsolete with trusted publishing
samebdon Dec 4, 2025
65e4b68
add smudgeplot pypi url to publish environment
samebdon Dec 4, 2025
cd71349
Update pyproject.toml
samebdon Feb 9, 2026
f144d03
Update version number in README.md
samebdon Feb 9, 2026
13a6fb1
Merge branch 'master' into dev
samebdon Feb 9, 2026
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2 changes: 1 addition & 1 deletion README.md
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# Smudgeplot

<font size ="4">**_Version: 0.5.3 Skylight_**</font>
<font size ="4">**_Version: 0.5.4 Skylight_**</font>

<font size ="4">**_Authors: Sam Ebdon, [Gene W Myers](https://github.com/thegenemyers) and [Kamil S. Jaron](https://github.com/KamilSJaron), Tianyi Ma._**</font>

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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -7,7 +7,7 @@ build-backend = "setuptools.build_meta"

[project]
name = "smudgeplot"
version = "0.5.3"
version = "0.5.4"
description = "Inference of ploidy and heterozygosity structure using whole genome sequencing data"
readme = "README.md"
license = "Apache-2.0"
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