Supervised benchmark et al.

.github/workflows/build.yml

@@ -54,7 +54,7 @@ jobs:
     # Uploads the built wheel files as artifacts, which can be downloaded
     # after the workflow run completes.
     - name: Upload artifacts
-      uses: actions/upload-artifact@v2
+      uses: actions/upload-artifact@v4
       with:
-        name: wheels
+        name: wheels-${{ matrix.python-version }}
         path: dist/*.whl

.github/workflows/ci.yml

@@ -24,6 +24,7 @@ jobs:
     # A matrix to run jobs across multiple versions of Python.
     strategy:
       matrix:
+        # python-version: [3.12.2]
         python-version: [3.9, 3.12.2]
     steps:
     - uses: actions/checkout@v3

.gitignore

@@ -1,18 +1,23 @@
 data/tissuenet
+data
 cellpose-main
 test_notebooks
 wandb
+dist
 experiments
 configs
 outputs
 src/actis
 .vscode
 *.pyc
+*.npz
 .coverage
 self_adapt.egg-info
 build
 *.png
+*.pt
 ruff.toml
 src/cellpose/analyze_adjusted_flow_orientations.ipynb
 src/cellpose/cellpose_model_class_play.ipynb
 src/cellpose/instance_segmentation_metrics.py
+src/dataset/fix_tissuenet.ipynb