SMLMView

WGLMakie-based interactive array viewer for N-dimensional microscopy data, inspired by DIPimage's dipshow.

Installation

using Pkg
Pkg.add(url="https://github.com/JuliaSMLM/SMLMView.jl")

Quick Start

using SMLMView

# 2D or 3D grayscale
data = rand(256, 256, 10)
smlmview(data)

# Multi-channel composite (2-3 channels)
ch1, ch2, ch3 = rand(256,256,10), rand(256,256,10), rand(256,256,10)
smlmview((ch1, ch2, ch3); names=("DAPI", "GFP", "A647"))

Features

• N-dimensional array viewing with slice navigation (j/l keys)
• Multi-channel RGB composite with CMY/RGB color presets
• Intensity mapping modes: linear, log, percentile clipping
• Global or per-slice contrast stretch
• Configurable keybindings via Preferences.jl
• Web-deployable via WGLMakie/Bonito

Keyboard Shortcuts

Key	Action
j / l	Previous / next slice
i / o	Zoom in / out
c	Cycle colormap
m	Cycle intensity mapping
g	Toggle global/slice stretch
r	Reset view
1-9 + 1-9	Change display dimensions (ND viewer)
1 / 2 / 3	Toggle channel visibility (composite viewer)

Documentation

• API Reference - Function signatures and examples
• Full Documentation - Guides and tutorials

License

MIT License - see LICENSE file.