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Removed UpdateJulia ... #223

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f0e6670
Removed UpdateJulia, but had to set GeometricSolutions to 0.5.9 tempo…
benedict-96 Mar 24, 2026
8ca500d
Adapted methods and constructors to new parameter types. Also includ…
benedict-96 Mar 24, 2026
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4 changes: 1 addition & 3 deletions Project.toml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name = "GeometricMachineLearning"
uuid = "194d25b2-d3f5-49f0-af24-c124f4aa80cc"
authors = ["Michael Kraus <michael.kraus@ipp.mpg.de>"]
version = "0.4.6"
authors = ["Michael Kraus <michael.kraus@ipp.mpg.de>"]

[deps]
AbstractNeuralNetworks = "60874f82-5ada-4c70-bd1c-fa6be7711c8a"
Expand Down Expand Up @@ -29,7 +29,6 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
SymbolicNeuralNetworks = "aed23131-dcd0-47ca-8090-d21e605652e3"
Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
UpdateJulia = "770da0de-323d-4d28-9202-0e205c1e0aff"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444"

Expand All @@ -54,7 +53,6 @@ StatsBase = "0.33, 0.34"
SymbolicNeuralNetworks = "0.3"
Symbolics = "6.22"
TimerOutputs = "0.5"
UpdateJulia = "0.4"
Zygote = "0.6"
ZygoteRules = "0.2.7"
julia = "1.8"
Expand Down
28 changes: 14 additions & 14 deletions src/GeometricMachineLearning.jl
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Expand Up @@ -5,7 +5,7 @@ module GeometricMachineLearning
using ChainRulesCore
using Distances
using GeometricBase
using GeometricSolutions: GeometricSolution, EnsembleSolution, DataSeries, StateVariable
using GeometricSolutions: GeometricSolution, EnsembleSolution, DataSeries, StateVariable, TimeSeries
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@benedict-96 benedict-96 Mar 24, 2026

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Also importing TimeSeries now.

using GeometricEquations: EnsembleProblem, ODEProblem, HODEProblem, ODEEnsemble, HODEEnsemble
using KernelAbstractions
using LinearAlgebra
Expand Down Expand Up @@ -46,7 +46,7 @@ module GeometricMachineLearning
export initialparameters
export parameterlength
export NeuralNetworkParameters

export σ, sigmoid, softmax

# from GeometricBase to print docs
Expand Down Expand Up @@ -106,7 +106,7 @@ module GeometricMachineLearning

# this defines empty retraction type structs (doesn't rely on anything)
include("optimizers/manifold_related/retraction_types.jl")

export MatrixSoftmax, VectorSoftmax
include("activations/softmax.jl")

Expand All @@ -115,7 +115,7 @@ module GeometricMachineLearning

# + operation has been overloaded to work with NamedTuples!
export _add, apply_toNT, split_and_flatten, add!

# GPU specific operations
export convert_to_dev, Device, CPUDevice

Expand All @@ -139,7 +139,7 @@ module GeometricMachineLearning
include("optimizers/optimizer_caches.jl")
include("optimizers/optimizer.jl")
include("optimizers/gradient_optimizer.jl")
include("optimizers/momentum_optimizer.jl")
include("optimizers/momentum_optimizer.jl")
include("optimizers/adam_optimizer.jl")
include("optimizers/adam_optimizer_with_learning_rate_decay.jl")
include("optimizers/bfgs_cache.jl")
Expand Down Expand Up @@ -202,11 +202,11 @@ module GeometricMachineLearning
export AbstractTrainingMethod

export loss_single #, loss

export HnnTrainingMethod
export LnnTrainingMethod
export SympNetTrainingMethod

include("training_method/abstract_training_method.jl")

# INCLUDE DATA TRAINING STRUCTURE
Expand All @@ -227,8 +227,8 @@ module GeometricMachineLearning
export TrainingMethod
export symbol, shape
export min_length_batch


include("training_method/training_method.jl")

# INCLUDE DATA TRAINING STRUCTURE
Expand All @@ -237,11 +237,11 @@ module GeometricMachineLearning
export shape, symbols, dim, noisemaker, data_symbols # , problem
export reduce_symbols, reshape_intoSampledData
export aresame

include("data/data_training.jl")

export get_batch, complete_batch_size, check_batch_size

include("data/batch.jl")

# INCLUDE BACKENDS
Expand Down Expand Up @@ -329,7 +329,7 @@ module GeometricMachineLearning
export NeuralNetSolution
export problem, timestep, history, size_history
export set_sizemax_history

include("nnsolution/neural_net_solution.jl")

export EnsembleNeuralNetSolution
Expand Down Expand Up @@ -386,7 +386,7 @@ module GeometricMachineLearning
include("training_method/sympnet_basic_method.jl")

export default_method

include("training/default_method.jl")


Expand All @@ -409,4 +409,4 @@ module GeometricMachineLearning
export SymplecticTransformer

include("map_to_cpu.jl")
end
end
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