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reduce pool size to avoid OOM problems #15

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Merged
eascarrunz merged 1 commit into from
May 28, 2025
Merged

reduce pool size to avoid OOM problems #15

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2 changes: 1 addition & 1 deletion modules/bamutil.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ process bamutil_clipoverlap {
script:

"""
bam clipOverlap --storeOrig CG --poolSize 50000000 --in ${bam} --out ${bam}_clipoverlap.bam --stats > ${meta.id}_bamutil_clipoverlap.log
bam clipOverlap --storeOrig CG --poolSize 5000000 --in ${bam} --out ${bam}_clipoverlap.bam --stats > ${meta.id}_bamutil_clipoverlap.log
"""

}