SlicePrepper.m

function SlicePrepper(varargin)
	%SlicePrepper Multi-species histology track annotation program

	%% add subfolders
	if ~isdeployed
		%check version
		PF_AssertVersion();
		
		%disable buttons
		global sUPF_ChooseGui %#ok<TLEV>
		UPF_DisableButtons(sUPF_ChooseGui);
		
		%add folders
		strFullpath = mfilename('fullpath');
		strPath = fileparts(strFullpath);
		sDir=dir([strPath filesep '**' filesep]);
		
		%remove git folders
		sDir(contains({sDir.folder},[filesep '.git'])) = [];
		cellFolders = unique({sDir.folder});
		for intFolder=1:numel(cellFolders)
			addpath(cellFolders{intFolder});
		end
		
		%enable buttons
		UPF_EnableButtons(sUPF_ChooseGui);
	end
	
	%% try using Acquipix variables
	try
		sRP = RP_populateStructure();
		strDefaultPath = sRP.strProbeLocPath;
	catch
		sRP = struct; %#ok<NASGU>
		strDefaultPath=cd();
	end
	
	%% ask for folder & meta data (if any)
	sSliceData = SH_LoadSlicePath(strDefaultPath);
	if isempty(sSliceData),return;end
	
	%% load slices & pre-process
	SH_GenSlicePrepperGUI(sSliceData);
end