v1.1.0
Version 1.1.0 (Mar 22, 2025)
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Refactored the code into nerdss_model, nerdss_simulation, and nerdss_analysis modules.
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Unified figure plotting with the plot_figure() function in the analysis class.
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Added the ability to visualize model structure compared with PDB structure in Jupyter Notebooks using PyMOL.
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Added the ability to visualize trajectories in Jupyter Notebooks using OVITO.
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The previous unrefactored functions are retained in the analysis and model_setup modules for backward compatibility.
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Documentation for the Version 1.1.0 (https://ionerdss.readthedocs.io/en/latest/ionerdss_documentation_v1_1.html)