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v1.1.0

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@sikaoguo22 sikaoguo22 released this 22 Mar 19:24
· 617 commits to main since this release

Version 1.1.0 (Mar 22, 2025)

  • Refactored the code into nerdss_model, nerdss_simulation, and nerdss_analysis modules.

  • Unified figure plotting with the plot_figure() function in the analysis class.

  • Added the ability to visualize model structure compared with PDB structure in Jupyter Notebooks using PyMOL.

  • Added the ability to visualize trajectories in Jupyter Notebooks using OVITO.

  • The previous unrefactored functions are retained in the analysis and model_setup modules for backward compatibility.

  • Documentation for the Version 1.1.0 (https://ionerdss.readthedocs.io/en/latest/ionerdss_documentation_v1_1.html)