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  1. BrainGraphNet BrainGraphNet Public

    EvolveGCN implementation for predicting temporal brain connectivity patterns from fMRI time series. PyTorch-based framework for neuroscience research.

    Python 1

  2. Neurodevelopment-Prediction Neurodevelopment-Prediction Public

    A Python machine learning pipeline for predicting neurodevelopmental outcomes in infants using structural brain MRI features from the Zenodo Infant Brain MRI Dataset. Includes preprocessing, featur…

    Python

  3. colorectal-cancer-histopathology-classifier colorectal-cancer-histopathology-classifier Public

    Deep learning pipeline for automated colorectal cancer classification from histopathological images using ResNet-18. Achieves 97.8% accuracy on the NCT-CRC-HE-100K dataset without transfer learning…

    Python

  4. Tandem-Repeat-Genotyping-Analysis-of-DMPK Tandem-Repeat-Genotyping-Analysis-of-DMPK Public

    Nextflow pipeline for automated genotyping of tandem repeat expansions from PacBio HiFi data using TRGT, targeting 20 pathogenic loci. Includes Python/R tools for parsing, QC, and visualization of …

    Jupyter Notebook

  5. Brain-Connectivity-Based-Cognitive-Prediction Brain-Connectivity-Based-Cognitive-Prediction Public

    Machine learning pipeline to predict crystallized and fluid cognition from functional and structural brain connectivity. Complete Python implementation with 100 train/test splits, permutation testi…

    Python

  6. Comprehensive-Transcriptome-Analysis-of-Friedreich-s-Ataxia-Fibroblasts Comprehensive-Transcriptome-Analysis-of-Friedreich-s-Ataxia-Fibroblasts Public

    A comprehensive differential gene expression analysis of Friedreich's Ataxia (FRDA) patient fibroblasts versus control samples using RNA-seq data. This project identifies significantly dysregulated…

    Jupyter Notebook