IBP-3305 geolocation reengineering#769

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mderamos wants to merge 169 commits intomasterfrom

IBP-3305-GeolocationReengineering

Commits on Jan 21, 2020

Remove geolocation property in ExperimentModel and reference to GeolocationDao
darla-leafnode
committed
Removed reference to GeolocationDao
darla-leafnode
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Remove unused searcher classes
darla-leafnode
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Move Dao methods from GeolocationPropertyDao to EnvironmentPropertyDao
darla-leafnode
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Delete GeolocationPropertyDao class. Remove unused imports
darla-leafnode
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Merge branch 'master' into IBP-3389-GeolocationReengineeringSpike
darla-leafnode
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Remove references to nd_geolocation and nd_geolocationprop in DmsProjectDao queries
darla-leafnode
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Remove unused DataSetDao class
darla-leafnode
committed

Commits on Jan 22, 2020

Remove references to nd_geolocation and nd_geolocationprop in DAO queries
darla-leafnode
committed

Commits on Jan 23, 2020

Update references to geolocation id
darla-leafnode
committed

Commits on Jan 24, 2020

Commits on Jan 27, 2020

Commits on Jan 28, 2020

Remove unused code
darla-leafnode
committed

Commits on Jan 29, 2020

Set experiment environment ID properly for different dataset and experiment types
darla-leafnode
committed

Commits on Feb 5, 2020

Commits on Feb 6, 2020

Merge branch 'master' into IBP-3389-GeolocationReengineeringSpike
darla-leafnode
committed

Commits on Feb 13, 2020

Merge branch 'IBP-3389-GeolocationReengineeringSpike' into IBP-3305-GeolocationReengineering
darla-leafnode
committed

Commits on Feb 17, 2020

Commits on Feb 18, 2020

Commits on Feb 19, 2020

Commits on Feb 20, 2020

Commits on Feb 24, 2020

Use String.valueOf to avoid cast error.
Marc Ulysis De Ramos
committed
Fix query error
Marc Ulysis De Ramos
committed
Fixed query
Marc Ulysis De Ramos
committed
Removed nd_geolocation and nd_geolocation_prop references
Marc Ulysis De Ramos
committed
Fix the error in opening a study if it has field map info.
abatac
committed
Fix type conversion error.
abatac
committed

Commits on Feb 26, 2020

Commits on Feb 28, 2020

Commits on Mar 2, 2020

Fix query for getting observations for samples to also work for sub-observation dataset
darla-leafnode
committed
Experiment property entries (environment variables) should be created in all instances not just the first instance.
abatac
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Fix query syntax.
abatac
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Fixed logic checking for existing trial experiments
Marc Ulysis De Ramos
committed
Inner Join sideId(LocationId)
Marc Ulysis De Ramos
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Revert "Inner Join sideId(LocationId)"
Marc Ulysis De Ramos
committed
Fixed query in retrieving the study details
Marc Ulysis De Ramos
committed

Commits on Mar 3, 2020

Merge branch 'master' into IBP-3305-GeolocationReengineering
abatac
committed
Fix failing unit tests in StudyDataManagerImplTest.
abatac
committed
Removed duplicate code
Marc Ulysis De Ramos
committed

Commits on Mar 4, 2020

Merge branch 'master' into IBP-3305-GeolocationReengineering
abatac
committed

Commits on Mar 9, 2020

Merge branch 'master' into IBP-3305-GeolocationReengineering
Marc Ulysis De Ramos
committed

Commits on Mar 10, 2020

Renamed 'environment' to 'instance'
Marc Ulysis De Ramos
committed
Renamed 'environment' to 'instance'
Marc Ulysis De Ramos
committed
Renamed 'environment' to 'instance'
Marc Ulysis De Ramos
committed
Renamed 'environment' to 'instance'
Marc Ulysis De Ramos
committed
Revert "Renamed 'environment' to 'instance'"
Marc Ulysis De Ramos
committed
Revert "Renamed 'environment' to 'instance'"
Marc Ulysis De Ramos
committed
Revert "Renamed 'environment' to 'instance'"
Marc Ulysis De Ramos
committed
Revert "Renamed 'environment' to 'instance'"
Marc Ulysis De Ramos
committed

Commits on Mar 13, 2020

Fixed some failing unit tests
Marc Ulysis De Ramos
committed
Renamed EnvironmentDao to InstanceDao
Marc Ulysis De Ramos
committed
Removed unused method
Marc Ulysis De Ramos
committed
Used TermId constant for 1020 value
Marc Ulysis De Ramos
committed
Used DatasetTypeEnum for hardcoded dataset_type_id values
Marc Ulysis De Ramos
committed
Optimize query to get phenotypes of environments of germplasm pairs
darla-leafnode
committed
Fix query error
darla-leafnode
committed

Commits on Mar 16, 2020

Commits on Mar 17, 2020

Commits on Mar 18, 2020

Fix query error
darla-leafnode
committed
Merge branch 'master' into IBP-3305-GeolocationReengineering
Marc Ulysis De Ramos
committed
Merge branch 'master' into IBP-3305-GeolocationReengineering
Marc Ulysis De Ramos
committed
Fixed failing tests
Marc Ulysis De Ramos
committed
Fixed failing tests
Marc Ulysis De Ramos
committed
Fixed failing unit test
Marc Ulysis De Ramos
committed
Fixed unit tests
Marc Ulysis De Ramos
committed

Commits on Mar 19, 2020

Fixed failing unit tests
Marc Ulysis De Ramos
committed

Commits on Mar 20, 2020

Fixed failing unit test
Marc Ulysis De Ramos
committed
Removed logging
Marc Ulysis De Ramos
committed
Fixed failing unit tests and removed unused methods
Marc Ulysis De Ramos
committed
Removed unused methods and attributes
Marc Ulysis De Ramos
committed
Fixed failing unit test
Marc Ulysis De Ramos
committed

Commits on Mar 22, 2020

Fixed failing unit tests
Marc Ulysis De Ramos
committed
Fixed failing unit tests
Marc Ulysis De Ramos
committed
Fixed failing unit tests
Marc Ulysis De Ramos
committed

Commits on Mar 23, 2020

Fixed query
Marc Ulysis De Ramos
committed

Commits on Mar 24, 2020

Commits on Mar 25, 2020

Commits on Mar 26, 2020

Added getDatasetBasicDTOs method
Marc Ulysis De Ramos
committed
Merge branch 'master' into IBP-3305-GeolocationReengineering
Marc Ulysis De Ramos
committed

Commits on Mar 27, 2020

Commits on Apr 6, 2020

Commits on Apr 8, 2020

Optimize query for getting dataset instances by only getting environment metadata related to experimental design only if the dataset is the environment dataset
darla-leafnode
committed

Commits on Apr 14, 2020

Commits on Apr 15, 2020

Fix query error introduced by recent merge of master code
darla-leafnode
committed

Commits on Apr 16, 2020

Commits on Apr 21, 2020