The toppgene R/Bioconductor package provides a client interface to the ToppGene API for gene list enrichment analysis https://toppgene.cchmc.org/API.

Installation from Bioconductor

if (! require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("toppgene")

Installation for development

install.packages(c("BiocManager", "devtools"))
options(repos = BiocManager::repositories())
remotes::install_deps(dependencies = TRUE)
devtools::load_all()

Unit tests

devtools::test()

Unit test coverage

install.packages("covr")
cvg <- covr::package_coverage()
cvg
covr::report(cvg)

Packages checks

devtools::check()
install.packages("BiocManager")
BiocCheck::BiocCheck()
install.packages("lintr")
lintr::lint_package()