SCReadCounts-1.4.2

• Bump version for bioconda

SCReadCounts-1.4.1

• Support reference sequence label schemes without chromosome-style labels

ReadCounts-2.5.3

• Support reference sequence label schemes without chromosome-style labels

SCReadCounts-1.4.0

• New experimental tools for fast single-cell SNV discovery and read counting

SCReadCounts-1.3.2

• Fix bug where .gz and .bz2 files with the same name as output files were overwritten

SCExecute-1.3.3

• Fix bug where .gz and .bz2 files with the same name as output files were overwritten

ReadCounts-2.5.2

• Fix bug where .gz and .bz2 files with the same name as output files were overwritten

SCReadCounts-1.3.1

• New tool scVarLoci, work in progress (alpha)
• Fix logging for SCReadCounts options
• Remove batching of SNVs for readCounts
• Tweaks of pysam.pileup API call

ReadCounts-2.5.1

• Bug fix for varLoci
• Bug fix for extended output - read filtering statistics
• Update command-line argument order for varLoci
• Tweaks of pysam.pileup API call

SCReadCounts-1.3.0

• Addition of experimental tool, varLoci, for extraction of putative variant loci directly from BAM file
• Re-ordering of options in GUI to make things more understandable
• Documentation updates for consistency and correctness