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Submission: BMIN5030 Final Project - Jamie Benson#232

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JamieSBenson wants to merge 8 commits intoHimesGroup:masterfrom
JamieSBenson:master
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Submission: BMIN5030 Final Project - Jamie Benson#232
JamieSBenson wants to merge 8 commits intoHimesGroup:masterfrom
JamieSBenson:master

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@JamieSBenson
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Hello! Please find in here my final project analysis for BMIN5030.

Initial commit of a  _targets.R pipeline for clinic data processing:
- PDF and CSV ingestion
- geocoding
- probabilistic matching
- plotting

Adds supporting R scripts, updates .gitignore for new data and code files, and includes initial targets metadata and configuration files.
Added functions to import OD data from Cook cty ME office. Initial code (commented out) imports the file received from Gabby & Liz.

Code currently in use ("filter_ods") pulls the data from the open data API directly, and applies the filtering logic in the python code Gabby used to create the exports. Allows for flexible updating in the future.

Also added base leaflet mapping capabilities.
Massive commit!

Added lots of new functions importing census data, calculating distances between all clinic-year pairs and all overdoses, and conducting initial difference in difference models.

Also revised project template.
Shifted project to assess violent crime instead of overdose fatalities

Added final project presentation slides, and draft project report, which will be finalized in the next commit
Added final draft of my BMIN5030 report! Includes final analyses to date and written interpretation, and next steps. Cleaned up some files which were no longer needed.
Readme is updated now!
Not needed for submission
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