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.idea
.idea
 
 
ADD_maps
ADD_maps
 
 
Ageing
Ageing
 
 
AxCaliber_FA
AxCaliber_FA
 
 
HCP_network_analysis
HCP_network_analysis
 
 
Language
Language
 
 
Time_from_node_to_node
Time_from_node_to_node
 
 
Tractography
Tractography
 
 
balance
balance
 
 
blinded
blinded
 
 
calc_corr_statistics
calc_corr_statistics
 
 
cc_analysis
cc_analysis
 
 
clustering
clustering
 
 
figure_creation_scripts
figure_creation_scripts
 
 
folder_organization
folder_organization
 
 
fsl
fsl
 
 
mrtrix
mrtrix
 
 
ms_h
ms_h
 
 
network_analysis
network_analysis
 
 
old_tractography
old_tractography
 
 
parcellation
parcellation
 
 
reading_from_xls
reading_from_xls
 
 
time_delay_index
time_delay_index
 
 
useful_tools
useful_tools
 
 
yeo_sub_networks
yeo_sub_networks
 
 
.gitignore
.gitignore
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
Time_from_node_to_node.zip
Time_from_node_to_node.zip
 
 
__init__.py
__init__.py
 
 
advanced_interactive_viz.py
advanced_interactive_viz.py
 
 
all_subj.py
all_subj.py
 
 
average_con_mat.py
average_con_mat.py
 
 
basic_statistics.py
basic_statistics.py
 
 
calc_con_mat.py
calc_con_mat.py
 
 
cluster_fa_script.py
cluster_fa_script.py
 
 
draw_scatter_fit.py
draw_scatter_fit.py
 
 
draw_tracts_img.py
draw_tracts_img.py
 
 
examine_properties_tractography.py
examine_properties_tractography.py
 
 
extract_bundles.py
extract_bundles.py
 
 
extract_cc_cr.py
extract_cc_cr.py
 
 
genu_dist_vals.py
genu_dist_vals.py
 
 
length_caliber_scatter.py
length_caliber_scatter.py
 
 
mean_axcaliber_bundle.py
mean_axcaliber_bundle.py
 
 
mean_vals_cc_parts.py
mean_vals_cc_parts.py
 
 
msmt_example.py
msmt_example.py
 
 
myplot.png
myplot.png
 
 
non_norm_hist.py
non_norm_hist.py
 
 
nonwei_wei_semilog.py
nonwei_wei_semilog.py
 
 
out.html
out.html
 
 
recon_mcsd.py
recon_mcsd.py
 
 
reconst_mcsd.py
reconst_mcsd.py
 
 
reg_dti_fa_script.py
reg_dti_fa_script.py
 
 
remove_cci_outliers.py
remove_cci_outliers.py
 
 
show_bundle_add_along_tracts.py
show_bundle_add_along_tracts.py
 
 
show_cc_parts.py
show_cc_parts.py
 
 
show_cr.py
show_cr.py
 
 
show_mean_group_bundle.py
show_mean_group_bundle.py
 
 
simple_slice_viz.py
simple_slice_viz.py
 
 
single_fascicle_vizualization.py
single_fascicle_vizualization.py
 
 
tractography_csd.py
tractography_csd.py
 
 
weight_tract_using_mat_weights.py
weight_tract_using_mat_weights.py
 
 
weighted_tracts.py
weighted_tracts.py
 
 
wm_mprage.py
wm_mprage.py
 
 

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FT

All code relevant to Fiber Tracking, Preprocessing, and network analysis

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all fiber tracking codes

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