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Gene Coordinate Comparison Tool

A Streamlit app for comparing gene coordinate files in BED format.

Requirements

  • Python 3.12
  • pybedtools
  • streamlit
  • matplotlib

Setup

python3 -m venv ~/bioenv
source ~/bioenv/bin/activate
pip install -r requirements.txt
streamlit run myResearch.py

Usage

Upload two BED files to compare gene coordinates.

Credits

This app was developed with guidance from Dr. Mary Lauren Benton at Baylor University. The enrichment analysis function was written by Mary Lauren Benton (2017).

About

A Streamlit-based GUI for comparing gene sequences, designed to improve usability and accessibility in biomedical research. This tool provides an intuitive interface for uploading, analyzing, and visualizing differences between reference and mutated DNA sequences.

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