Merging in Drug NER and latest master branches#37
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gsvitak wants to merge 3 commits intoGoTeamEpsilon:masterfrom
Open
Merging in Drug NER and latest master branches#37gsvitak wants to merge 3 commits intoGoTeamEpsilon:masterfrom
gsvitak wants to merge 3 commits intoGoTeamEpsilon:masterfrom
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…anges Conflicts: ctakes-web-rest/src/main/java/org/apache/ctakes/rest/service/CtakesRestController.java
Contributor
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Can somebody merge this, please? |
Member
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I must apologize for my delayed response. I just updated the README to better reflect the alpha state of this software and how we are picking back up with the project. Life/work/other projects got in the way recently and we are going to finish it off with a more simple approach (no web viewer, Docker, or MySQL integration - just the REST server and hsqldb). Let’s hold off on this PR until we have made more progress. (THANK you for the contribution and we'll get it in.) With this new refreshed take on the project, I hope you follow along and consider contributing. If you do want to help, just let me know here or email me at matthewvita48 at gmail dot com. -Matthew |
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Setup complete but cannot get project running as per README Hi @MatthewVi Could you please help with it? <!doctype html><title>HTTP Status 500 – Internal Server Error</title><style type="text/css">H1 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:22px;} H2 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:16px;} H3 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:14px;} BODY {font-family:Tahoma,Arial,sans-serif;color:black;background-color:white;} B {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;} P {font-family:Tahoma,Arial,sans-serif;background:white;color:black;font-size:12px;}A {color : black;}A.name {color : black;}.line {height: 1px; background-color: #525D76; border: none;}</style> HTTP Status 500 – Internal Server ErrorType Exception Report Message Servlet.init() for servlet ctakes-rest-service threw exception Description The server encountered an unexpected condition that prevented it from fulfilling the request. Exception javax.servlet.ServletException: Servlet.init() for servlet ctakes-rest-service threw exception Root Cause org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ctakesRestController': Invocation of init method failed; nested exception is javax.servlet.ServletException: org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.concurrent.ThreadSafeFastLookup" failed. (Descriptor: <unknown>) Root Cause javax.servlet.ServletException: org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.concurrent.ThreadSafeFastLookup" failed. (Descriptor: <unknown>) Root Cause org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.concurrent.ThreadSafeFastLookup" failed. (Descriptor: <unknown>) Root Cause org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary Root Cause org.apache.uima.analysis_engine.annotator.AnnotatorContextException: EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary Root Cause java.lang.reflect.InvocationTargetException Root Cause java.sql.SQLException: Access denied for user 'root'@'localhost' Note The full stack trace of the root cause is available in the server logs. Apache Tomcat/8.0.53 |
Member
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@ultragen74 Looks like a good place to start with the errors are with getting MySQL right:
You'll want to set the root password to |
Member
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@gsvitak Sorry for the wait - can you rebase this branch, clean up the Thanks again! |
Member
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Could someone brief the intention behind this pull request? I believe lab finder is already included in full piper |
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Is this pull request stale now? |
Member
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Hi all,
Here's my notes from looking at this:
Once these issues are addressed/discussed, I'd love to have a couple of folks QA it before merge. |
Member
Hi, cTAKES web rest module is merged to cTAKES official codebase - https://github.com/apache/ctakes/tree/trunk/ctakes-web-rest You can raise pull request against the same for any changes as this branch was basically meant for scaffolding the web rest module. Let me know if you have any questions. |
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