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tools
tools
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
candidate_generation_for_entity_linking.ipynb
candidate_generation_for_entity_linking.ipynb
 
 
creating_a_huggingface_dataset_object.ipynb
creating_a_huggingface_dataset_object.ipynb
 
 
custom_token_classification_models.ipynb
custom_token_classification_models.ipynb
 
 
further_pretraining_a_lm.ipynb
further_pretraining_a_lm.ipynb
 
 
getting_mesh_tags_with_entrez_api.ipynb
getting_mesh_tags_with_entrez_api.ipynb
 
 
huggingface_tokenizer_tricks.ipynb
huggingface_tokenizer_tricks.ipynb
 
 
loading_bioc_xml_files_and_archives.ipynb
loading_bioc_xml_files_and_archives.ipynb
 
 
loading_pubmed_xml_files.ipynb
loading_pubmed_xml_files.ipynb
 
 
pytorch_training_loop_with_custom_hugging_face_model.ipynb
pytorch_training_loop_with_custom_hugging_face_model.ipynb
 
 
training_a_biencoder_end_to_end_for_entity_linking.ipynb
training_a_biencoder_end_to_end_for_entity_linking.ipynb
 
 
twohop_link_prediction.ipynb
twohop_link_prediction.ipynb
 
 
vector_similarity_with_a_neural_network.ipynb
vector_similarity_with_a_neural_network.ipynb
 
 

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Code Tutorials

This repo hosts some short code tutorials created for various purposes by members of the AI4BioMed lab. They can be navigated at the resources page of the group website. We hope they're useful.

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A selection of short code tutorials

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CC0-1.0 license
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