Prerequisites to installation :
- miniconda (https://docs.anaconda.com/free/miniconda/miniconda-install/)
- git (https://git-scm.com/downloads)
In a terminal, optionally install mamba for faster installation
conda install -y -c conda-forge mamba
Then, clone this repository and its unpackages dependancies in the desired location :
git clone --recurse-submodules https://github.com/GeraultTr/Root_BRIDGES.git
git clone https://github.com/GeraultTr/metafspm.git
git clone --recurse-submodules https://github.com/GeraultTr/data_utility.git
cd root_bridges
Then, install packaged dependancies with :
mamba create -n root_bridges -c conda-forge -c openalea3 --strict-channel-priority --file requirements.txt
mamba activate root_bridges
Finally, setup the locally unpackaged dependancies :
cd .../root_bridges
python -m multisetup.py develop
cd .../metafspm
python -m setup.py develop
cd .../data_utility
python -m multisetup.py develop