GitHub - Genomics-HSE/glcont: estimating contamination

Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
Analysis		Analysis
Other		Other
new_bams		new_bams
real_bam		real_bam
.DS_Store		.DS_Store
.gitignore		.gitignore
311humans.fasta		311humans.fasta
CnsMaj3_1.pl		CnsMaj3_1.pl
MN.pyx		MN.pyx
Untitled.ipynb		Untitled.ipynb
calc_stats.sh		calc_stats.sh
cns.py		cns.py
consensus_difference.py		consensus_difference.py
contaminants.fa		contaminants.fa
contamsim.py		contamsim.py
data_make.py		data_make.py
draw_glcont.py		draw_glcont.py
draw_ternary_plot.py		draw_ternary_plot.py
error_data_generate.py		error_data_generate.py
error_plot.py		error_plot.py
generate_ternary_plot_data.py		generate_ternary_plot_data.py
gl_cont.ipynb		gl_cont.ipynb
gl_cont.py		gl_cont.py
gl_cont_cython.c		gl_cont_cython.c
glcont.sh		glcont.sh
glcont_test.py		glcont_test.py
glcont_tests.py		glcont_tests.py
makefile		makefile
modification_comparison.py		modification_comparison.py
mpileup_reference.py		mpileup_reference.py
mt_tree_analisys.py		mt_tree_analisys.py
mttree.json		mttree.json
new_bam_draw.py		new_bam_draw.py
new_ban_draw.ipynb		new_ban_draw.ipynb
plot.py		plot.py
preprocess.py		preprocess.py
rCRS.fa		rCRS.fa
real_bam_calc_stats.sh		real_bam_calc_stats.sh
real_bam_sim.py		real_bam_sim.py
real_sim_q.py		real_sim_q.py
run_mix.sh		run_mix.sh
run_mix_p.sh		run_mix_p.sh
setup.py		setup.py
technical_notes.txt		technical_notes.txt

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