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34 changes: 34 additions & 0 deletions .github/workflows/python-package-conda.yml
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Original file line number Diff line number Diff line change
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name: Python Package using Conda

on: [push]

jobs:
build-linux:
runs-on: ubuntu-latest
strategy:
max-parallel: 5

steps:
- uses: actions/checkout@v4
- name: Set up Python 3.10
uses: actions/setup-python@v3
with:
python-version: '3.10'
- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
conda env update --file environment.yml --name base
- name: Lint with flake8
run: |
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
Comment on lines +21 to +32
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Copilot AI Oct 12, 2025

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Updating the base conda environment is not recommended as it can cause conflicts. Consider creating a dedicated environment instead using 'conda env create' or 'conda create'.

Suggested change
- name: Install dependencies
run: |
conda env update --file environment.yml --name base
- name: Lint with flake8
run: |
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
- name: Create conda environment
run: |
conda env create --file environment.yml
- name: Activate environment and lint with flake8
run: |
source activate $(head -1 environment.yml | cut -d' ' -f2)
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Activate environment and test with pytest
run: |
source activate $(head -1 environment.yml | cut -d' ' -f2)

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conda install pytest
Comment on lines +24 to +33
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Copilot AI Oct 12, 2025

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Installing packages separately with multiple conda install commands is inefficient. Consider installing all dependencies in a single command: 'conda install flake8 pytest' or include them in the environment.yml file.

Suggested change
- name: Lint with flake8
run: |
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
conda install pytest
- name: Install flake8 and pytest
run: |
conda install flake8 pytest
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |

Copilot uses AI. Check for mistakes.
Comment on lines +26 to +33
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Copilot AI Oct 12, 2025

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Installing packages separately with multiple conda install commands is inefficient. Consider installing all dependencies in a single command: 'conda install flake8 pytest' or include them in the environment.yml file.

Suggested change
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
conda install pytest
conda install flake8 pytest
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |

Copilot uses AI. Check for mistakes.
pytest