TCR-Repertoire-Analysis

Note: aligned.dm are not included in remote repository due to size

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
.Rproj.user		.Rproj.user
TRUST4_outs		TRUST4_outs
output		output
scRepertoire_outs		scRepertoire_outs
testing		testing
.Rhistory		.Rhistory
.gitignore		.gitignore
Paradis2012_Book_AnalysisOfPhylogeneticsAndEvol.pdf		Paradis2012_Book_AnalysisOfPhylogeneticsAndEvol.pdf
README.md		README.md
TCR repertoire Notes.docx		TCR repertoire Notes.docx
TCR_Repertoire.Rproj		TCR_Repertoire.Rproj
TCR_analysis.html		TCR_analysis.html
TCR_analysis.ipynb		TCR_analysis.ipynb
methods.docx		methods.docx
msa_run.txt		msa_run.txt
muscle5.1.win64.exe		muscle5.1.win64.exe
process_data_to_fasta.R		process_data_to_fasta.R
run_msa.R		run_msa.R
tree_construction.R		tree_construction.R
tree_construction.RData		tree_construction.RData

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